View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4364-Insertion-11 (Length: 639)

Name: NF4364-Insertion-11
Description: NF4364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4364-Insertion-11
NF4364-Insertion-11
[»] chr1 (5 HSPs)
chr1 (200-639)||(17285453-17285893)
chr1 (8-208)||(17284869-17285069)
chr1 (360-639)||(39335452-39335746)
chr1 (456-634)||(19039841-19040020)
chr1 (277-342)||(39335793-39335858)
[»] chr4 (14 HSPs)
chr4 (417-639)||(26628738-26628961)
chr4 (456-631)||(15738403-15738578)
chr4 (456-634)||(23141758-23141936)
chr4 (277-353)||(26629121-26629197)
chr4 (357-434)||(26628976-26629053)
chr4 (461-634)||(8651538-8651711)
chr4 (461-634)||(8663345-8663518)
chr4 (466-634)||(53747378-53747546)
chr4 (277-346)||(26629317-26629386)
chr4 (359-419)||(50942807-50942867)
chr4 (599-639)||(22205609-22205649)
chr4 (456-503)||(22205522-22205569)
chr4 (283-322)||(22206368-22206407)
chr4 (279-342)||(50942932-50942995)
[»] chr5 (4 HSPs)
chr5 (357-639)||(8716818-8717117)
chr5 (456-634)||(1997508-1997686)
chr5 (277-353)||(8717187-8717263)
chr5 (591-634)||(14987599-14987642)
[»] chr8 (8 HSPs)
chr8 (357-548)||(36837676-36837867)
chr8 (277-353)||(36838600-36838676)
chr8 (277-353)||(36838379-36838456)
chr8 (277-352)||(36838160-36838235)
chr8 (277-352)||(36837936-36838015)
chr8 (357-405)||(36838043-36838091)
chr8 (357-405)||(36838263-36838311)
chr8 (357-405)||(36838484-36838532)
[»] chr3 (3 HSPs)
chr3 (456-634)||(33815394-33815572)
chr3 (456-634)||(50353702-50353880)
chr3 (283-322)||(48609327-48609366)
[»] chr2 (6 HSPs)
chr2 (505-639)||(28504307-28504441)
chr2 (357-434)||(28504500-28504577)
chr2 (277-353)||(28504645-28504722)
chr2 (417-459)||(28504443-28504485)
chr2 (462-581)||(541412-541530)
chr2 (598-634)||(541357-541393)
[»] chr6 (2 HSPs)
chr6 (456-634)||(24847567-24847744)
chr6 (283-323)||(30341026-30341066)
[»] scaffold0001 (1 HSPs)
scaffold0001 (456-571)||(406920-407035)
[»] chr7 (2 HSPs)
chr7 (456-515)||(11650953-11651012)
chr7 (277-322)||(4658674-4658719)


Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 200 - 639
Target Start/End: Original strand, 17285453 - 17285893
Alignment:
Q  200 attattacctccatcagagtgaacctcaacatttgcttcttcatcattgttgtccttctcagcacttatgtgacctcagcatgtttgccctaatcactag 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17285453 attattacctccatcagagtgaacctcaacatttgcttcttcatcattgttgtccttctcagcacttatgtgacctcagcatgtttgccctaatcactag 17285552  T
Q  300 cttttttccctcctaagcatgtatctaatctcagccgttgattaaaattcattgaaaacgtcataatggccattgaaaacgtagttaatgctaatcaaat 399  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17285553 cttttttccctcctaagcacgtatctaatctcagccgttgattaaaattcattgaaaacgtcataatggccattgaaaacgtagttaatgctaatcaaat 17285652  T
Q  400 caccataactcttaacgattaccaactcctaccatcatttttatgtacataaactcttaacgattgcattcccattatcctctcctaacatcatttttag 499  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17285653 caccataactcttaacgattaccatctcctaccatcatttttatgtacataaactcttaacgattgcatacccattatcctctcctaacatcatttttag 17285752  T
Q  500 atcaagacagtttagacttaccgatggaaagtgatccattaactctcttagctatgcactgcttgaagggtacaaataacac-nnnnnnntctaaccatg 598  Q
    | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||    
T  17285753 accaagacagtttagacttaccaatggaaagtgatccattaactctcttagctatgcactgcttgaagggtacaaataacacaaaaaaaatctaaccatg 17285852  T
Q  599 tttcatcttctttcttgatctcttattttttgtttcgttta 639  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17285853 tttcatcttctttcttgatctcttattttttgtttcgttta 17285893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 8 - 208
Target Start/End: Original strand, 17284869 - 17285069
Alignment:
Q  8 actcttactgaaaaaggctaggttttgcaattttcttctgcttctctgccaataacttagtctttactccacatatgaggtcttcttcctatgattgtca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17284869 actcttactgaaaaaggctaggttttgcaattttcttctgcttctctgccaataacttagtctttactccacacatgaggtcttcttcctatgattgtca 17284968  T
Q  108 gattcctcattgctagaatctgaatgagtaatctcatatgtttctccattactagtgttaccaccattaatctcatttgtttatccattactattattac 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17284969 gattcctcattgctagaatctgaatgagtaatctcatatgtttctccattactagtgttaccaccattaatctcatttgtttctccattactattattac 17285068  T
Q  208 c 208  Q
    |    
T  17285069 c 17285069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 360 - 639
Target Start/End: Complemental strand, 39335746 - 39335452
Alignment:
Q  360 tcataatggccattgaaaacgtagttaatgctaatcaaatcaccataactcttaacgattaccaa----------------ctcctaccatcatttttat 443  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||    
T  39335746 tcataatggtcattgaaaacgtagttaatgctaatcaaatcaccataactcttaacgattaccatatcctaccattatcatctcctaccatcatttttat 39335647  T
Q  444 gtacataaactcttaacgattgcattcccattatcctctcctaacatcatttttagatcaagacagtttagacttaccgatggaaagtgatccattaact 543  Q
    ||||| ||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  39335646 gtacaaaaacttttaacgattgtattctcattatcctctcctaacatcatttttagatcaagacagtttagacttaccgatggaaagtgagtcattaact 39335547  T
Q  544 ctcttagctatgcactgcttgaagggtacaaataacacnnnnnnntctaaccatgtttcatcttctttcttgatctcttattttttgtttcgttta 639  Q
    ||||||||  ||||||||||||||||||||||||| ||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39335546 ctcttagcattgcactgcttgaagggtacaaataa-acaaaaaaatctaaccatgtttcatcttctttcttgatctcttattttttgtttcgttta 39335452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 456 - 634
Target Start/End: Complemental strand, 19040020 - 19039841
Alignment:
Q  456 ttaacgattgcattcccat--tatcctctcctaacatcatttttagatcaagacagtttagacttaccgatggaaagtgatccattaactctcttagcta 553  Q
    ||||||||| |||||||||  |||||||||||| |||||||||  |  ||| |||||||||||||| | |||||||||||| ||  | ||||||||||      
T  19040020 ttaacgattccattcccatattatcctctcctaccatcattttatgtccaa-acagtttagacttaacaatggaaagtgatgcacaagctctcttagcat 19039922  T
Q  554 tgcactgcttgaagggtacaaataacacnnnnnnntctaaccatgtttcatcttctttcttgatctcttattttttgtttc 634  Q
    || |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| |||| |||||||||    
T  19039921 tgtactgcttgaagggtacaaataacacagcaaaatctaaccatgtttcatcttctttcttgatctgttatgttttgtttc 19039841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 39335858 - 39335793
Alignment:
Q  277 agcatgtttgccctaatcactagcttttttccctcctaagcatgtatctaatctcagccgttgatt 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39335858 agcatgtttgccctaatcactagcttttttccctcctaagcatgtatctaatctcagtcgttgatt 39335793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 4e-89; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 417 - 639
Target Start/End: Complemental strand, 26628961 - 26628738
Alignment:
Q  417 attaccaactcctaccatcatttttatgtacataaactcttaacgattgcattcccattatcctctcctaacatcatttttagatcaagacagtttagac 516  Q
    ||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26628961 attaccatctcctactatcatttttatgtacagaaactcttaacgattgcattcccattatcctctcctaacatcatttttagatcaagacagtttagac 26628862  T
Q  517 ttaccgatggaaagtgatccattaactctcttagctatgcactgcttgaagggtacaaataacacnnnnnnntctaaccatgtttcatcttctttcttga 616  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||       |||||||||||||||||| ||||||||     
T  26628861 ttaccgatggaaagtgatccattaactctcttagcattgcactgcttgaagggtacaaataacacaaaaaaatctaaccatgtttcatctcctttcttgt 26628762  T
Q  617 tctctta-ttttttgtttcgttta 639  Q
    ||||||| ||||||||||||||||    
T  26628761 tctcttatttttttgtttcgttta 26628738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 456 - 631
Target Start/End: Original strand, 15738403 - 15738578
Alignment:
Q  456 ttaacgattgcattcccattatcctctcctaacatcatttttagatcaagacagtttagacttaccgatggaaagtgatccattaactctcttagctatg 555  Q
    ||||||||||||||| ||||||||||||||| ||| |||||||  || | ||| |||||||||| | |||||||||||| ||  ||||||||||||  ||    
T  15738403 ttaacgattgcattctcattatcctctcctaccataatttttacgtccaaacaatttagacttaacaatggaaagtgatgcacgaactctcttagcattg 15738502  T
Q  556 cactgcttgaagggtacaaataacacnnnnnnntctaaccatgtttcatcttctttcttgatctcttattttttgt 631  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| ||||||    
T  15738503 cactgcttgaagggtacaaataacacatcaaaatctaaccatgtttcatcttctttcttgatctcttatgttttgt 15738578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 456 - 634
Target Start/End: Complemental strand, 23141936 - 23141758
Alignment:
Q  456 ttaacgattgcattcccattatcctctcctaacatcatttttagatcaagacagtttagacttaccgatggaaagtgatccattaactctcttagctatg 555  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| ||  | |||||||||||||| | |||||||| ||| ||   |||||||||||  ||    
T  23141936 ttaacgattgcattcccattatcctcttctaccatcatttttacatacaaacagtttagacttaacaatggaaagggatgcacatactctcttagcattg 23141837  T
Q  556 cactgcttgaagggtacaaataacacnnnnnnntctaaccatgtttcatcttctttcttgatctcttattttttgtttc 634  Q
    |||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| |||| ||||    
T  23141836 cactacttgaagggtacaaataacacagcaaaatctaaccatgtttcatcttctttcttgatctcttatgttttatttc 23141758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 277 - 353
Target Start/End: Complemental strand, 26629197 - 26629121
Alignment:
Q  277 agcatgtttgccctaatcactagcttttttccctcctaagcatgtatctaatctcagccgttgattaaaattcattg 353  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26629197 agcatgtttgccctaatcactagcttttttccctcctaagcatgcatctaatctcagccgttgattaaaattcattg 26629121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 357 - 434
Target Start/End: Complemental strand, 26629053 - 26628976
Alignment:
Q  357 acgtcataatggccattgaaaacgtagttaatgctaatcaaatcaccataactcttaacgattaccaactcctaccat 434  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  26629053 acgtcataatggccattgaaaacgtagttaatgctaatcaaatcaccataactcttaacgattatcatctcctaccat 26628976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 461 - 634
Target Start/End: Complemental strand, 8651711 - 8651538
Alignment:
Q  461 gattgcattcccattatcctctcctaacatcatttttagatcaagacagtttagacttaccgatggaaagtgatccattaactctcttagctatgcactg 560  Q
    ||||||||||||| |||| ||  ||||||||||||||   |||| |||| ||||||||| | |||||||||||| ||  ||||||||||||  | |||||    
T  8651711 gattgcattcccactatcatcggctaacatcatttttccgtcaaaacaggttagacttaacaatggaaagtgatgcacaaactctcttagcctttcactg 8651612  T
Q  561 cttgaagggtacaaataacacnnnnnnntctaaccatgtttcatcttctttcttgatctcttattttttgtttc 634  Q
    |||||||||||||||||||||       | ||||||| |||||||||| ||||||||||||||| |||||||||    
T  8651611 cttgaagggtacaaataacacaacaaaatataaccatatttcatcttcgttcttgatctcttatgttttgtttc 8651538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 461 - 634
Target Start/End: Complemental strand, 8663518 - 8663345
Alignment:
Q  461 gattgcattcccattatcctctcctaacatcatttttagatcaagacagtttagacttaccgatggaaagtgatccattaactctcttagctatgcactg 560  Q
    ||||||||||||| |||| ||  ||||||||||||||   |||| |||| ||||||||| | |||||||||||| ||  ||||||||||||  | |||||    
T  8663518 gattgcattcccactatcatcggctaacatcatttttccgtcaaaacaggttagacttaacaatggaaagtgatgcacaaactctcttagcctttcactg 8663419  T
Q  561 cttgaagggtacaaataacacnnnnnnntctaaccatgtttcatcttctttcttgatctcttattttttgtttc 634  Q
    |||||||||||||||||||||       | ||||||| |||||||||| ||||||||||||||| |||||||||    
T  8663418 cttgaagggtacaaataacacaacaaaatataaccatatttcatcttcgttcttgatctcttatgttttgtttc 8663345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 466 - 634
Target Start/End: Complemental strand, 53747546 - 53747378
Alignment:
Q  466 cattcccattatcctctcctaacatcatttttagatcaagacagtttagacttaccgatggaaagtgatccattaactctcttagctatgcactgcttga 565  Q
    |||||||| |||| ||  ||||||||||||||   |||| ||| |||||||||| | |||||||||||| ||  ||||||||||||  ||||||||||||    
T  53747546 cattcccactatcatcgactaacatcatttttccgtcaaaacattttagacttaacaatggaaagtgatgcacaaactctcttagccttgcactgcttga 53747447  T
Q  566 agggtacaaataacacnnnnnnntctaaccatgtttcatcttctttcttgatctcttattttttgtttc 634  Q
    ||||||||||||||||       ||||||||||||| |||||| ||||||||||||||| || ||||||    
T  53747446 agggtacaaataacacaacaaaatctaaccatgttttatcttcgttcttgatctcttatgttatgtttc 53747378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 277 - 346
Target Start/End: Complemental strand, 26629386 - 26629317
Alignment:
Q  277 agcatgtttgccctaatcactagcttttttccctcctaagcatgtatctaatctcagccgttgattaaaa 346  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26629386 agcatgtttgccctaatcactagcttttttccctcctaagcatgcatctaatctcagccgttgattaaaa 26629317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 359 - 419
Target Start/End: Complemental strand, 50942867 - 50942807
Alignment:
Q  359 gtcataatggccattgaaaacgtagttaatgctaatcaaatcaccataactcttaacgatt 419  Q
    ||||||||| ||| ||||||| || ||||||||||| ||| ||||||||||||||||||||    
T  50942867 gtcataatgaccaatgaaaacatatttaatgctaataaaaccaccataactcttaacgatt 50942807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 599 - 639
Target Start/End: Original strand, 22205609 - 22205649
Alignment:
Q  599 tttcatcttctttcttgatctcttattttttgtttcgttta 639  Q
    |||||||||||||||||||||||||| |||||| |||||||    
T  22205609 tttcatcttctttcttgatctcttatgttttgtgtcgttta 22205649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 503
Target Start/End: Original strand, 22205522 - 22205569
Alignment:
Q  456 ttaacgattgcattcccattatcctctcctaacatcatttttagatca 503  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||| ||||    
T  22205522 ttaacgattgcatacccattatcatctcctaccatcatttttacatca 22205569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 322
Target Start/End: Original strand, 22206368 - 22206407
Alignment:
Q  283 tttgccctaatcactagcttttttccctcctaagcatgta 322  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  22206368 tttgccctaatcactagcatttttccctcctaaacatgta 22206407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 50942995 - 50942932
Alignment:
Q  279 catgtttgccctaatcactagcttttttccctcctaagcatgtatctaatctcagccgttgatt 342  Q
    |||||||||||||||| |||||| ||||||||||||| |  |  | ||||||||||||||||||    
T  50942995 catgtttgccctaatctctagctattttccctcctaacctggagtttaatctcagccgttgatt 50942932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 166; Significance: 2e-88; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 357 - 639
Target Start/End: Complemental strand, 8717117 - 8716818
Alignment:
Q  357 acgtcataatggccattgaaaacgtagttaatgctaatcaaatcaccataactcttaacgattac----------------caactcctaccatcatttt 440  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||                 || ||||||||||||||||    
T  8717117 acgtcataatggtcattgaaaacgtagttaatgctaatcaaatcaccataactcttaacgattattatctcctaccattatcatctcctaccatcatttt 8717018  T
Q  441 tatgtacataaactcttaacgattgcattcccattatcctctcctaacatcatttttagatcaagacagtttagacttaccgatggaaagtgatccatta 540  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||    
T  8717017 tatgtacaaaaactcttaacgattgcattcccattatcctctactaacatcatttttagatcaagatagtttagacttaccgatggaaagcgagccatta 8716918  T
Q  541 actctcttagctatgcactgcttgaagggtacaaataacac-nnnnnnntctaaccatgtttcatcttctttcttgatctcttattttttgtttcgttta 639  Q
    |||||||||||  |||| ||||||||||||||||| |||||        ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8716917 actctcttagcattgcattgcttgaagggtacaaaaaacacaaaaaaaatctaaccatgtttaatcttctttcttgatctcttattttttgtttcgttta 8716818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 456 - 634
Target Start/End: Complemental strand, 1997686 - 1997508
Alignment:
Q  456 ttaacgattgcattcccattatcctctcctaacatcatttttagatcaagacagtttagacttaccgatggaaagtgatccattaactctcttagctatg 555  Q
    ||||| ||||||||| ||||||||||||||| |||||||||||  || | |||||||||||||| | |||||||||||| ||  ||||||||||||  ||    
T  1997686 ttaacaattgcattcacattatcctctcctaccatcatttttacgtccaaacagtttagacttaacaatggaaagtgatgcacaaactctcttagcattg 1997587  T
Q  556 cactgcttgaagggtacaaataacacnnnnnnntctaaccatgtttcatcttctttcttgatctcttattttttgtttc 634  Q
    |||||||||||||| |||||||||||       |||||||||||||||||||||||||||||||||||| |||||||||    
T  1997586 cactgcttgaaggggacaaataacacatcaaaatctaaccatgtttcatcttctttcttgatctcttatgttttgtttc 1997508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 277 - 353
Target Start/End: Complemental strand, 8717263 - 8717187
Alignment:
Q  277 agcatgtttgccctaatcactagcttttttccctcctaagcatgtatctaatctcagccgttgattaaaattcattg 353  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| | ||||||| ||||||||||    
T  8717263 agcatgttcgccctaatcactagcttttttccctcctaaacatgtatctaatctcaacagttgattcaaattcattg 8717187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 591 - 634
Target Start/End: Original strand, 14987599 - 14987642
Alignment:
Q  591 taaccatgtttcatcttctttcttgatctcttattttttgtttc 634  Q
    ||||||||||||||||||||||||||||||||||  ||||||||    
T  14987599 taaccatgtttcatcttctttcttgatctcttatgctttgtttc 14987642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 4e-80; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 357 - 548
Target Start/End: Complemental strand, 36837867 - 36837676
Alignment:
Q  357 acgtcataatggccattgaaaacgtagttaatgctaatcaaatcaccataactcttaacgattaccaactcctaccatcatttttatgtacataaactct 456  Q
    |||||||||||| |||| |||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  36837867 acgtcataatggtcatttaaaacgtaattaatgttaatcaaatcaccataactcttaacgattaccatctcctaccatcatttttatgtacagaaactct 36837768  T
Q  457 taacgattgcattcccattatcctctcctaacatcatttttagatcaagacagtttagacttaccgatggaaagtgatccattaactctctt 548  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||    
T  36837767 taacgattgcattctcattatcctctcctaacatcatttttagatcaagacaattaagacttacccatggaaagtgatccattaactctctt 36837676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 277 - 353
Target Start/End: Complemental strand, 36838676 - 36838600
Alignment:
Q  277 agcatgtttgccctaatcactagcttttttccctcctaagcatgtatctaatctcagccgttgattaaaattcattg 353  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36838676 agcatgtttgccctaatcactaacttttttccctcctaagcatgtatctaatctcagccgttgattcaaattcattg 36838600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 277 - 353
Target Start/End: Complemental strand, 36838456 - 36838379
Alignment:
Q  277 agcatgtttgccctaatcactagctttttt-ccctcctaagcatgtatctaatctcagccgttgattaaaattcattg 353  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  36838456 agcatgtttgccctaatcactagctttttttccctcctaagcatgtatctaatctcagccgttgattcaaattcattg 36838379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 277 - 352
Target Start/End: Complemental strand, 36838235 - 36838160
Alignment:
Q  277 agcatgtttgccctaatcactagcttttttccctcctaagcatgtatctaatctcagccgttgattaaaattcatt 352  Q
    ||||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||||||||||||| |||||||||    
T  36838235 agcatgtttgcgctaatcactagtttttttccctcataagcatgtatctaatttcagccgttgattcaaattcatt 36838160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 277 - 352
Target Start/End: Complemental strand, 36838015 - 36837936
Alignment:
Q  277 agcatgtttgccctaatcactagcttttttccctcctaa----gcatgtatctaatctcagccgttgattaaaattcatt 352  Q
    |||||||||||||||||| ||||||||||||||||||||    ||||||||||||||||||||||||||| |||||||||    
T  36838015 agcatgtttgccctaatcgctagcttttttccctcctaattaagcatgtatctaatctcagccgttgattcaaattcatt 36837936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 36838091 - 36838043
Alignment:
Q  357 acgtcataatggccattgaaaacgtagttaatgctaatcaaatcaccat 405  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36838091 acgtcataatggccattgaaaacgtaattaatgctaatcaaatcaccat 36838043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 36838311 - 36838263
Alignment:
Q  357 acgtcataatggccattgaaaacgtagttaatgctaatcaaatcaccat 405  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  36838311 acgtcataatggtcattgaaaacgtaattaatgctaatcaaatcaccat 36838263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 36838532 - 36838484
Alignment:
Q  357 acgtcataatggccattgaaaacgtagttaatgctaatcaaatcaccat 405  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||||||    
T  36838532 acgtcataatggtcattaaaaacgtaattaatgctaatcaaatcaccat 36838484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 456 - 634
Target Start/End: Complemental strand, 33815572 - 33815394
Alignment:
Q  456 ttaacgattgcattcccattatcctctcctaacatcatttttagatcaagacagtttagacttaccgatggaaagtgatccattaactctcttagctatg 555  Q
    ||||| ||||||||||||||||||||||||| |||||||||||  || | |||||||||||||| | |||||||||||| ||  ||||||||||||  ||    
T  33815572 ttaacaattgcattcccattatcctctcctatcatcatttttatgtccaaacagtttagacttaacaatggaaagtgatgcaccaactctcttagcattg 33815473  T
Q  556 cactgcttgaagggtacaaataacacnnnnnnntctaaccatgtttcatcttctttcttgatctcttattttttgtttc 634  Q
    ||||||||||||| ||||||||||||       |||||||||||||||||||||||||||||||||||| ||| |||||    
T  33815472 cactgcttgaaggatacaaataacacggcaaaatctaaccatgtttcatcttctttcttgatctcttatgtttcgtttc 33815394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 456 - 634
Target Start/End: Complemental strand, 50353880 - 50353702
Alignment:
Q  456 ttaacgattgcattcccattatcctctcctaacatcatttttagatcaagacagtttagacttaccgatggaaagtgatccattaactctcttagctatg 555  Q
    |||||||||||||||||| | |||||  ||| |||||| |||   |||| | |||||||||||| | |||||||||||| |||| |||||||||||  ||    
T  50353880 ttaacgattgcattcccactgtcctcggctaccatcatatttccgtcaaaagagtttagacttaacaatggaaagtgatgcattgactctcttagccttg 50353781  T
Q  556 cactgcttgaagggtacaaataacacnnnnnnntctaaccatgtttcatcttctttcttgatctcttattttttgtttc 634  Q
    ||  |||||||||||| |||||||||       ||||  |||||||||||||||||||||||||| ||| |||||||||    
T  50353780 cagggcttgaagggtaaaaataacactacaaaatctagtcatgtttcatcttctttcttgatctcctatgttttgtttc 50353702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 322
Target Start/End: Complemental strand, 48609366 - 48609327
Alignment:
Q  283 tttgccctaatcactagcttttttccctcctaagcatgta 322  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  48609366 tttgccctaatcactagcatttttccctcctaaacatgta 48609327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 4e-43; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 505 - 639
Target Start/End: Complemental strand, 28504441 - 28504307
Alignment:
Q  505 gacagtttagacttaccgatggaaagtgatccattaactctcttagctatgcactgcttgaagggtacaaataacacnnnnnnntctaaccatgtttcat 604  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||       |||||||||| |||||    
T  28504441 gacagtttagacttactgatggaaagtgatccattaactctcttagcatttcactgcttgaagggtacaaataacacaaaaaaatctaaccatgattcat 28504342  T
Q  605 cttctttcttgatctcttattttttgtttcgttta 639  Q
    |||||||||||||||||||||||||||| ||||||    
T  28504341 cttctttcttgatctcttattttttgttacgttta 28504307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 357 - 434
Target Start/End: Complemental strand, 28504577 - 28504500
Alignment:
Q  357 acgtcataatggccattgaaaacgtagttaatgctaatcaaatcaccataactcttaacgattaccaactcctaccat 434  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||    
T  28504577 acgtcataatggtcattgaaaacgtagttaatgctaatcaaatcaccataactcctaacgattactatctcctaccat 28504500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 277 - 353
Target Start/End: Complemental strand, 28504722 - 28504645
Alignment:
Q  277 agcatgtttgccctaatcactagctttt-ttccctcctaagcatgtatctaatctcagccgttgattaaaattcattg 353  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  28504722 agcatgtttgtcctaatcactagcttttattccctcctaagcatgtatcaaatctcagctgttgattaaaattcattg 28504645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 417 - 459
Target Start/End: Complemental strand, 28504485 - 28504443
Alignment:
Q  417 attaccaactcctaccatcatttttatgtacataaactcttaa 459  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  28504485 attaccatctcctaccatcatttttatgtacataaactcttaa 28504443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 462 - 581
Target Start/End: Complemental strand, 541530 - 541412
Alignment:
Q  462 attgcattcccattatcctctcctaacatcatttttagatcaagacagtttagacttaccgatggaaagtgatccattaactctcttagctatgcactgc 561  Q
    |||||||||| || ||||||||| | | |||||| ||  |||| ||||||||||||||   |||||||||||  ||  ||||||||||||  |||| ||     
T  541530 attgcattcc-atgatcctctcccaccttcatttgtacgtcaaaacagtttagacttaaaaatggaaagtgaagcacaaactctcttagccttgcattgt 541432  T
Q  562 ttgaagggtacaaataacac 581  Q
    ||||||||||||||||||||    
T  541431 ttgaagggtacaaataacac 541412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 598 - 634
Target Start/End: Complemental strand, 541393 - 541357
Alignment:
Q  598 gtttcatcttctttcttgatctcttattttttgtttc 634  Q
    |||||||||||||| |||||||||||| |||||||||    
T  541393 gtttcatcttctttattgatctcttatgttttgtttc 541357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 456 - 634
Target Start/End: Complemental strand, 24847744 - 24847567
Alignment:
Q  456 ttaacgattgcattcccattatcctctcctaacatcatttttagatcaagacagtttagacttaccgatggaaagtgatccattaactctcttagctatg 555  Q
    |||||||||| ||||||| |||| |   ||||||||||||||   |||| |||| ||||||||| | ||||||||||||  |  ||||||||||||  ||    
T  24847744 ttaacgattgtattcccactatcattggctaacatcatttttccgtcaaaacaggttagacttaacaatggaaagtgatg-acaaactctcttagccttg 24847646  T
Q  556 cactgcttgaagggtacaaataacacnnnnnnntctaaccatgtttcatcttctttcttgatctcttattttttgtttc 634  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||| ||||||||||||||| |||||||||    
T  24847645 cactgcttgaagggtacaaataacacaacaaaatctaaccatgtttcatcttcgttcttgatctcttatgttttgtttc 24847567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 30341066 - 30341026
Alignment:
Q  283 tttgccctaatcactagcttttttccctcctaagcatgtat 323  Q
    |||||||||||| ||||| |||||||||||||| |||||||    
T  30341066 tttgccctaatccctagcatttttccctcctaaacatgtat 30341026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 456 - 571
Target Start/End: Original strand, 406920 - 407035
Alignment:
Q  456 ttaacgattgcattcccattatcctctcctaacatcatttttagatcaagacagtttagacttaccgatggaaagtgatccattaactctcttagctatg 555  Q
    |||||||||| || ||||||| ||||||||| ||||||||||| ||||| | |||||||||||| | |||||||||||| ||  ||||||||||||  ||    
T  406920 ttaacgattgaatacccattaacctctcctaccatcatttttacatcaaaatagtttagacttaacaatggaaagtgatgcacaaactctcttagcattg 407019  T
Q  556 cactgcttgaagggta 571  Q
    ||||||||||||||||    
T  407020 cactgcttgaagggta 407035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 456 - 515
Target Start/End: Original strand, 11650953 - 11651012
Alignment:
Q  456 ttaacgattgcattcccattatcctctcctaacatcatttttagatcaagacagtttaga 515  Q
    ||||||||||||| ||||||||||||||||| ||| ||||||| ||||| ||||||||||    
T  11650953 ttaacgattgcatacccattatcctctcctaccataatttttacatcaaaacagtttaga 11651012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 4658719 - 4658674
Alignment:
Q  277 agcatgtttgccctaatcactagcttttttccctcctaagcatgta 322  Q
    |||||||||||||||||| || || |||||| ||||||||||||||    
T  4658719 agcatgtttgccctaatcccttgcatttttctctcctaagcatgta 4658674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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