View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4364-Insertion-12 (Length: 614)
Name: NF4364-Insertion-12
Description: NF4364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4364-Insertion-12 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 8 - 614
Target Start/End: Original strand, 2484013 - 2484606
Alignment:
| Q |
8 |
acaattgcatttgaagttattggattaattgagaggcggtttggtaataagaaaaaatattgcgatccactcagaatggtttgtttggtgtggttgtgat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| |
|
|
| T |
2484013 |
acaattgcatttgaagttattggattaattgagaggcggtttggtaataagaaaaaatattacgatccactcagaaaggcttgtttggtgtggttgtgat |
2484112 |
T |
|
| Q |
108 |
gcaatttggtgataaattgtatatttagttcgaatgcaaaatgaattgatattgatattattgatggggctgtcaaggaagatttggtaaatggtggttt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2484113 |
gcaatttggtgataaattgtatatttagttcgaatgcaaaatgaattgatattgatattattgatggggctgtcaaggaagatttggtaaatggtggttt |
2484212 |
T |
|
| Q |
208 |
gattaaggttggttattctggttgtactttgaattcggtttggttcatttggtttggtatgttgacttctcactttgattgtctttctctctttggtttc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2484213 |
gattaaggttggttattctggttgtactttgaattcggtt--------------tggtatgttgacttctcactttgattgtctttctctctttggtttc |
2484298 |
T |
|
| Q |
308 |
ttcctttctgtttgactgcatatctcccctttatgattgcacttcacttccctctatttgattcgttctctcttttgatttgtttctttgtttaactagt |
407 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || |
|
|
| T |
2484299 |
ttcctttctgtttgactgcacatctcccctttatgattgcacttcacttccctctatttgattcgttctctcttttgatttgtttgtttgtttaattggt |
2484398 |
T |
|
| Q |
408 |
ttctccttcattagtttttctgattgattgtccctctctgttggtctcttcttcatacttttgaatgattgtatctctccctcttggtttcttcttctga |
507 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2484399 |
ttctccctcattagtttttctcattgattgtccctctctgttggtctcttcttcattcttttgattgattgtatctctccctcttgatttcttcttctga |
2484498 |
T |
|
| Q |
508 |
ttgattggattgcttctccctgttttgattcttctaattgattgcttctctccctttttaattccttctaattgatttcttct-cctctgttgattgttc |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||| ||| |
|
|
| T |
2484499 |
ttgattggattgcttctccctgttttgattcttctaattgattgtttctccccctttttaattccttctaattgatttcttctcccttagttgattattc |
2484598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 17927526 - 17927413
Alignment:
| Q |
17 |
tttgaagttattggattaattgagaggcggtttggtaataagaa-aaaatattgcgatccactcagaatggtttgtttggtgtggttgtgatgcaatttg |
115 |
Q |
| |
|
||||||||||||||||||||| |||||| | | ||||||||||| |||||| | |||||||||| | |||| ||||||| |||||| ||| ||||| |
|
|
| T |
17927526 |
tttgaagttattggattaattaagaggcagatcggtaataagaaaaaaatagggagatccactcaattttgtttatttggtgcggttgttatgaaatttt |
17927427 |
T |
|
| Q |
116 |
gtgataaattgtat |
129 |
Q |
| |
|
||||||||||||| |
|
|
| T |
17927426 |
atgataaattgtat |
17927413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 515 - 565
Target Start/End: Complemental strand, 11828434 - 11828384
Alignment:
| Q |
515 |
gattgcttctccctgttttgattcttctaattgattgcttctctccctttt |
565 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
11828434 |
gattgcttctcccccttttgattcttttaattgattgcttctttccctttt |
11828384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 532 - 565
Target Start/End: Original strand, 8574429 - 8574462
Alignment:
| Q |
532 |
ttgattcttctaattgattgcttctctccctttt |
565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
8574429 |
ttgattcttctaattgattgcttctctccctttt |
8574462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University