View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4364-Insertion-13 (Length: 545)
Name: NF4364-Insertion-13
Description: NF4364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4364-Insertion-13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 8 - 545
Target Start/End: Complemental strand, 7082349 - 7081810
Alignment:
| Q |
8 |
tcatgagcgtggccaatatagattatgtttcatgtagctgtctctg-tagtagaatataagagaagattcagctnnnnnnnnnnnnnnnnnnnn-ttgtt |
105 |
Q |
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| T |
7082349 |
tcatgagcgtggccaatatagattgtgtttcattttgctgtctctgatagtagaatataagagaagattcagctaaaagaaaaacaccaaaaaaattgtt |
7082250 |
T |
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| Q |
106 |
gcatatcataatcccattcacttcattatgcccaaaatcatgattcttggtttcatcacccgcatgctctcttctcaaacctcacactctacattctcac |
205 |
Q |
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| T |
7082249 |
gcatatcataatcccattcacttcattatgcccaaaatcatgattcttggtttcatcacccgcatgctctcttctcaaacctcacactctacattctcac |
7082150 |
T |
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| Q |
206 |
tctaactnnnnnnnnnnnnnnnnnctataaataccaactacaccccccaacctttccctcacctctacttcaacactaaaaccaaatctannnnnnnnnn |
305 |
Q |
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| T |
7082149 |
tctaactctcacacacacacacacctataaataccaactacaccccccaacctttctctcacctctacttcaacactaaaaccaaatctatctatctctc |
7082050 |
T |
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| Q |
306 |
nnnnnnnnacttgttcccaaaatggaattttctggttttgaaggctttgaaaaaaggttagaacttcacttctttggtgatgatccaaatccaaccatta |
405 |
Q |
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| T |
7082049 |
cctctctcacttgttcccaaaatggaattttctggttttgaaggctttgaaaaaagattagaacttcatttctttggtgatgatccaaatccaaccatta |
7081950 |
T |
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| Q |
406 |
atcaccaactaggcctaagaaaacttgagtttgaatccattcaacaaatcctacaagctgttcaatgcacagttgtttcagcagttggaaactcttactt |
505 |
Q |
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| T |
7081949 |
atcaccaactaggcctaagaaaacttgagtttgaatccattcaacaaatcctacaagctgttcaatgcacagttgtttcagcagttggaaactcttactt |
7081850 |
T |
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| Q |
506 |
tgatgcctatgttttatcagaatcaagtctctttgtatat |
545 |
Q |
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| T |
7081849 |
tgatgcctatgttttatcagaatcaagtctctttgtatat |
7081810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 336 - 541
Target Start/End: Original strand, 49019792 - 49019988
Alignment:
| Q |
336 |
tctggttttgaaggctttgaaaaaaggttagaacttcacttctttggtgatgatccaaatccaaccattaatcaccaactaggcctaagaaaacttgagt |
435 |
Q |
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| T |
49019792 |
tctggctttgaaggatttgagaaacggttggaacttcatttctttggagatgatccaatt---acctt------ccaactaggtctaagaaaaattgatt |
49019882 |
T |
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| Q |
436 |
ttgaatccattcaacaaatcctacaagctgttcaatgcacagttgtttcagcagttggaaactcttactttgatgcctatgttttatcagaatcaagtct |
535 |
Q |
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| T |
49019883 |
ttgaatcaatacaacaagttttagaagctgttcaatgcacagtggtttcagcagttggtaactcttactttgatgcatacgttttatcagaatcaagcct |
49019982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 49019528 - 49019606
Alignment:
| Q |
102 |
tgttgcatatcataatcccattcacttcattatgcccaaaatcatgattcttggtttcatcacccgcatgctctcttct |
180 |
Q |
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| T |
49019528 |
tgttgcatatcataatcctactcacttcattatgcctacaatcatgattcttggttccatcacccgcatgctcttttct |
49019606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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