View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4364-Insertion-15 (Length: 417)
Name: NF4364-Insertion-15
Description: NF4364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4364-Insertion-15 |
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| [»] scaffold0031 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 7 - 416
Target Start/End: Original strand, 51226621 - 51227030
Alignment:
| Q |
7 |
aacaacagcataaagaagtgcttttggaagagttctaccaggatttttcacttctcctgcaagagtactaactgaatcccaataattcaaattccaaaac |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51226621 |
aacaacagcataaagaagtgcttttggaagagttctaccaggattattcacttctcctgcaagagtactaactgaatcccaataattcaaattccaaaac |
51226720 |
T |
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| Q |
107 |
aatgtattcaaatataaaccccatttaacactcttcaaatccatcatcttccacctttttggttttattctaggaattgaaattaaccccataacaagaa |
206 |
Q |
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| T |
51226721 |
aatgtattcaaatataaaccccatttaacactcttcaaatccatcatcttccacctttttggttttattctaggaattgaaattaaccccataacaagaa |
51226820 |
T |
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| Q |
207 |
aaggactcaatgaaaaaattcctaataaaatagcagcccaacccacaattgttaatcctctataattcatataagtaagaatcaaagttaaaactaaaac |
306 |
Q |
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| T |
51226821 |
aaggactcaatgaaaaaattcccaataaaatagcagcccaacccacaattgttaatcctctataattcatataagtaagaatcaaagttaaaactaaaac |
51226920 |
T |
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| Q |
307 |
agcaattatccttggaaaaccactagcaataattggaatagctgatttaagataatctaaaaacaaaactggatataaagcattgtcaattacaccacta |
406 |
Q |
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| T |
51226921 |
agcaattatccttggaaaaccactagcaataattggaatagctgatttaagataatctaaaaacaaaactggatataaagcattgtcaattacaccacta |
51227020 |
T |
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| Q |
407 |
agccatttca |
416 |
Q |
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| T |
51227021 |
agccatttca |
51227030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 416
Target Start/End: Original strand, 42585 - 42661
Alignment:
| Q |
340 |
tggaatagctgatttaagataatctaaaaacaaaactggatataaagcattgtcaattacaccactaagccatttca |
416 |
Q |
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| T |
42585 |
tggaatagttgacttaagataatcaagaaacaaaactggatacaaagcattgtctatgacaccactaatccatttca |
42661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 125
Target Start/End: Original strand, 42292 - 42370
Alignment:
| Q |
47 |
ggatttttcacttctcctgcaagagtactaactgaatcccaataattcaaattccaaaacaatgtattcaaatataaac |
125 |
Q |
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| T |
42292 |
ggattttcaacttcaccagcaagagtacttatagaatcccaataattaagattccaaaaaagtgtattcaaatacaaac |
42370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 275
Target Start/End: Original strand, 42422 - 42520
Alignment:
| Q |
177 |
taggaattgaaattaaccccataacaagaaaaggactcaatgaaaaaattcctaataaaatagcagcccaacccacaattgttaatcctctataattca |
275 |
Q |
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| T |
42422 |
taggaattgaaataaatcccataacaacaaaaggaagtaatgaaaaaatccctaaacaaacagcaacaaatccaacaatagttaaacctctataattca |
42520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 416
Target Start/End: Complemental strand, 11054846 - 11054777
Alignment:
| Q |
347 |
gctgatttaagataatctaaaaacaaaactggatataaagcattgtcaattacaccactaagccatttca |
416 |
Q |
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| T |
11054846 |
gctgacttaagataatcaagaaatagaacaggatacaaagcattatcaatcacgccactaagccatttca |
11054777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 11055149 - 11055072
Alignment:
| Q |
47 |
ggatttttcacttctcctgcaagagtactaactgaatcccaataattcaaattccaaaacaatgtattcaaatataaa |
124 |
Q |
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| T |
11055149 |
ggattttcaacttcaccagcaagagtacttatggagtcccaataatttagattccaaaacagcgtattcaaatataaa |
11055072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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