View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4364-Insertion-17 (Length: 346)
Name: NF4364-Insertion-17
Description: NF4364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4364-Insertion-17 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 49540198 - 49540366
Alignment:
| Q |
7 |
atatagtgcctctgcatgcattcatttaatccaccaagagacagagcaaagtnnnnnnntacataaataaaatctagacacagatccccctcttttacgg |
106 |
Q |
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| T |
49540198 |
atatagtgcctctgcatgcattcatttaatccaccaagagacagagcaaagtaaaaaa-tacataaacaaaatctagacacagatccccctcttttacgg |
49540296 |
T |
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| Q |
107 |
ttatcttaaataaaaaatatttggatacatatacatatgaaaaagaaacagaaataatttagtcatacaa |
176 |
Q |
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| T |
49540297 |
ttatcttaaataaaaaataattggatacatatacatatgaaaaagaaacagaaataatttagtcatacaa |
49540366 |
T |
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Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 207 - 346
Target Start/End: Original strand, 49540397 - 49540535
Alignment:
| Q |
207 |
gtgtgtcaaaacacttataatttgaagttctgacaaagtaagtannnnnnngttttgagaacacattttactgttataataagatcatatccctaaattc |
306 |
Q |
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| T |
49540397 |
gtgtgtcaaaacacttataatttgaagttctgacagagtaagtatttttt-gttttgagaacacattttactgttataataagatcatatccctaaattc |
49540495 |
T |
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| Q |
307 |
aggacggtcatgaaaattcaatatttggccttccacatca |
346 |
Q |
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| T |
49540496 |
aggacggtcatgaaaattcaatatttggccttccacatca |
49540535 |
T |
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