View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4364-Insertion-21 (Length: 176)

Name: NF4364-Insertion-21
Description: NF4364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4364-Insertion-21
NF4364-Insertion-21
[»] chr1 (4 HSPs)
chr1 (18-166)||(46435783-46435931)
chr1 (18-165)||(35760640-35760787)
chr1 (18-166)||(29119616-29119767)
chr1 (85-166)||(27055507-27055588)
[»] chr5 (3 HSPs)
chr5 (18-166)||(18014617-18014765)
chr5 (22-166)||(39058272-39058416)
chr5 (18-166)||(14148668-14148814)
[»] chr8 (4 HSPs)
chr8 (18-166)||(3469395-3469541)
chr8 (18-136)||(42906255-42906371)
chr8 (128-166)||(42906688-42906726)
chr8 (106-141)||(30929025-30929060)
[»] chr4 (1 HSPs)
chr4 (18-166)||(24021347-24021493)
[»] chr3 (4 HSPs)
chr3 (67-165)||(30991456-30991554)
chr3 (79-158)||(93198-93277)
chr3 (18-62)||(30991391-30991435)
chr3 (18-53)||(93160-93195)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 4e-55; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 4e-55
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 46435931 - 46435783
Alignment:
Q  18 tttcatatctatcctatataatactacatcatagatttcgagcacttgcacatacatatatacataatattataaatgtgatgaaagagtatgataacta 117  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||  ||||||||||||||||||| |||||||||| |||||| | |||||||||||||    
T  46435931 tttcatatccatcctatataatactacatcatagatttccagcaccagcacatacatatatacatagtattataaatatgatgatatagtatgataacta 46435832  T
Q  118 gattgtatattataaataatacatacacctcttctctatgtgttgtttc 166  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  46435831 gattgcatattataaataatacatgcacctcttctctatgtgttgtttc 46435783  T

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Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 35760787 - 35760640
Alignment:
Q  18 tttcatatctatcctatataatactacatcatagatttcgagcacttgcacatacatatatacataatattataaatgtgatgaaagagtatgataacta 117  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||  ||||||||||||| ||||| |||||||||| |||||| |||||||||||||||    
T  35760787 tttcatatccatcctatataatactacatcatagatttccagcaccagcacatacatatacacatagtattataaatatgatgatagagtatgataacta 35760688  T
Q  118 gattgtatattataaataatacatacacctcttctctatgtgttgttt 165  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||    
T  35760687 gattgcatattataaataatacatgcacctcttctctatgtgttgttt 35760640  T

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Target: chr1; HSP #3
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 29119767 - 29119616
Alignment:
Q  18 tttcatatctatcctatataata---ctacatcatagatttcgagcacttgcacatacatatatacataatattataaatgtgatgaaagagtatgataa 114  Q
    ||||||||| |||||||||||||   |||||||||||||||| || ||   |||||||||||| ||||| |||||||||| |||||| | ||||| ||||    
T  29119767 tttcatatccatcctatataataatactacatcatagatttccagaaccaacacatacatatacacatagtattataaatatgatgatatagtataataa 29119668  T
Q  115 ctagattgtatattataaataatacatacacctcttctctatgtgttgtttc 166  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  29119667 ctagattgcatattataaataatacatgcacctcttctctatgtgttgtttc 29119616  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 27055507 - 27055588
Alignment:
Q  85 tattataaatgtgatgaaagagtatgataactagattgtatattataaataatacatacacctcttctctatgtgttgtttc 166  Q
    |||||||||| |||||| |||||||||||| ||||||| |||||||||||||||||| ||||| ||||||||||||||||||    
T  27055507 tattataaatatgatgatagagtatgataattagattgcatattataaataatacatgcaccttttctctatgtgttgtttc 27055588  T

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Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 18014765 - 18014617
Alignment:
Q  18 tttcatatctatcctatataatactacatcatagatttcgagcacttgcacatacatatatacataatattataaatgtgatgaaagagtatgataacta 117  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||  ||||||||||||| ||||| |||||||||| |||||| || ||||||||||||    
T  18014765 tttcatatccatcctatataatactacatcatagatttccagcaccagcacatacatatacacatagtattataaatatgatgatagtgtatgataacta 18014666  T
Q  118 gattgtatattataaataatacatacacctcttctctatgtgttgtttc 166  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  18014665 gattgcatattataaataatacatgcacctcttctctatgtgttgtttc 18014617  T

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Target: chr5; HSP #2
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 39058416 - 39058272
Alignment:
Q  22 atatctatcctatataatactacatcatagatttcgagcacttgcacatacatatatacataatattataaatgtgatgaaagagtatgataactagatt 121  Q
    ||||| ||||||||||||||||||||||||||||| |||||  ||||||||||||| ||||| |||||||||| |||||| |||||||||||||||||||    
T  39058416 atatccatcctatataatactacatcatagatttccagcaccagcacatacatatacacatagtattataaatatgatgatagagtatgataactagatt 39058317  T
Q  122 gtatattataaataatacatacacctcttctctatgtgttgtttc 166  Q
    | ||||||||||||| |||| ||||||||||||||||||||||||    
T  39058316 gcatattataaataacacatgcacctcttctctatgtgttgtttc 39058272  T

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Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 14148668 - 14148814
Alignment:
Q  18 tttcatatctatcctatataatactacatcatagatttcgagcacttgcacatacatatatacataatattataaatgtgatgaaagagtatgataacta 117  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||  ||||||||||||| |||  ||||||||||| |||||| | |||||||||||||    
T  14148668 tttcatatccatcctatataatactacatcatagatttccagcaccagcacatacatatacaca--atattataaatatgatgatatagtatgataacta 14148765  T
Q  118 gattgtatattataaataatacatacacctcttctctatgtgttgtttc 166  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  14148766 gattgcatattataaataatacatgcacctcttctctatgtgttgtttc 14148814  T

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Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 3469541 - 3469395
Alignment:
Q  18 tttcatatctatcctatataatactacatcatagatttcgagcacttgcacatacatatatacataatattataaatgtgatgaaagagtatgataacta 117  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||  ||||||||||||| |||   |||||||||| |||||| | |||||||||||||    
T  3469541 tttcatatccatcctatataatactacatcatagatttccagcaccagcacatacatatacacag--tattataaatatgatgatatagtatgataacta 3469444  T
Q  118 gattgtatattataaataatacatacacctcttctctatgtgttgtttc 166  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3469443 gattgtatattataaataatacatgcacctcttctctatgtgttgtttc 3469395  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 42906255 - 42906371
Alignment:
Q  18 tttcatatctatcctatataatactacatcatagatttcgagcacttgcacatacatatatacataatattataaatgtgatgaaagagtatgataacta 117  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||  ||||||||||||| ||||  |||||||||| |||||| | |||||||||||||    
T  42906255 tttcatatccatcctatataatactacatcatagatttccagcaccagcacatacatatacacat--tattataaatatgatgatatagtatgataacta 42906352  T
Q  118 gattgtatattataaataa 136  Q
    |||||||||||||||||||    
T  42906353 gattgtatattataaataa 42906371  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 42906688 - 42906726
Alignment:
Q  128 tataaataatacatacacctcttctctatgtgttgtttc 166  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  42906688 tataaataatacatgcacctcttctctatgtgttgtttc 42906726  T

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Target: chr8; HSP #4
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 106 - 141
Target Start/End: Complemental strand, 30929060 - 30929025
Alignment:
Q  106 gtatgataactagattgtatattataaataatacat 141  Q
    ||||||||||||||||  ||||||||||||||||||    
T  30929060 gtatgataactagattacatattataaataatacat 30929025  T

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Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 24021347 - 24021493
Alignment:
Q  18 tttcatatctatcctatataatactacatcatagatttcgagcacttgcacatacatatatacataatattataaatgtgatgaaagagtatgataacta 117  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||  ||||||||||||| ||||  |||||||||| |||||| | |||||||||||||    
T  24021347 tttcatatccatcctatataatactacatcatagatttccagcaccagcacatacatatacacat--tattataaatatgatgatatagtatgataacta 24021444  T
Q  118 gattgtatattataaataatacatacacctcttctctatgtgttgtttc 166  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  24021445 gattgcatattataaataatacatgcacctcttctctatgtgttgtttc 24021493  T

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Target: chr3 (Bit Score: 67; Significance: 5e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 67 - 165
Target Start/End: Original strand, 30991456 - 30991554
Alignment:
Q  67 acatacatatatacataatattataaatgtgatgaaagagtatgataactagattgtatattataaataatacatacacctcttctctatgtgttgttt 165  Q
    ||||||||||| ||||| |||||||||| |||||| || ||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||    
T  30991456 acatacatatacacatagtattataaatatgatgatagtgtatgataactggattgcatattataaataatacatgcacctcttctctatgtgttgttt 30991554  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 7e-26
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 93198 - 93277
Alignment:
Q  79 acataatattataaatgtgatgaaagagtatgataactagattgtatattataaataatacatacacctcttctctatgt 158  Q
    ||||| |||||||||| |||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  93198 acatagtattataaatatgatgatagagtatgataactagattgcatattataaataatacatgcacctcttctctatgt 93277  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 30991391 - 30991435
Alignment:
Q  18 tttcatatctatcctatataatactacatcatagatttcgagcac 62  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||    
T  30991391 tttcatatccatcctatataatactacatcatagatttccagcac 30991435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 93160 - 93195
Alignment:
Q  18 tttcatatctatcctatataatactacatcatagat 53  Q
    ||||||||| ||||||||||||||||||||||||||    
T  93160 tttcatatccatcctatataatactacatcatagat 93195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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