View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4364-Insertion-3 (Length: 1043)

Name: NF4364-Insertion-3
Description: NF4364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4364-Insertion-3
NF4364-Insertion-3
[»] chr4 (5 HSPs)
chr4 (7-1024)||(54778483-54779485)
chr4 (7-909)||(54789784-54790662)
chr4 (17-908)||(52282415-52283314)
chr4 (698-732)||(843150-843184)
chr4 (925-959)||(54789722-54789756)
[»] chr8 (3 HSPs)
chr8 (568-909)||(19295825-19296149)
chr8 (925-959)||(19295763-19295797)
chr8 (702-732)||(3556317-3556347)
[»] chr6 (4 HSPs)
chr6 (698-760)||(22745526-22745588)
chr6 (698-733)||(6074043-6074078)
chr6 (698-733)||(6074529-6074564)
chr6 (702-736)||(585725-585759)
[»] chr2 (5 HSPs)
chr2 (698-741)||(21186631-21186674)
chr2 (698-736)||(26144328-26144366)
chr2 (702-759)||(25384480-25384537)
chr2 (700-761)||(35198211-35198272)
chr2 (702-739)||(37232156-37232193)
[»] chr3 (8 HSPs)
chr3 (698-739)||(18268007-18268048)
chr3 (698-734)||(21768622-21768658)
chr3 (698-737)||(5457224-5457263)
chr3 (702-741)||(28525028-28525067)
chr3 (698-739)||(47542551-47542592)
chr3 (698-739)||(47542770-47542811)
chr3 (698-739)||(47542989-47543030)
chr3 (698-739)||(47556436-47556477)
[»] chr7 (2 HSPs)
chr7 (698-734)||(20204255-20204291)
chr7 (700-741)||(8093842-8093883)
[»] chr5 (4 HSPs)
chr5 (698-733)||(9895163-9895198)
chr5 (698-741)||(10392914-10392957)
chr5 (698-733)||(15086714-15086749)
chr5 (702-743)||(4991144-4991185)


Alignment Details
Target: chr4 (Bit Score: 863; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 863; E-Value: 0
Query Start/End: Original strand, 7 - 1024
Target Start/End: Original strand, 54778483 - 54779485
Alignment:
Q  7 aaagggtggatggaatatgctagttaatttttaaaaaatagatatcacattcccatctataacaccaatccacataccctaaaaaaggtcactttcacag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54778483 aaagggtggatggaatatgctagttaatttttaaaaaatagatatcacattcccatctataacaccaatccacataccctaaaaaaggtcactttcacag 54778582  T
Q  107 aatatgaataggtgaaaataaataaagttggttgaaaaagaaaacagaacttgtgatcgacagtttgatttctggaatggtgtgattctaaacaacaaat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  54778583 aatatgaataggtgaaaataaataaagttggttgaaaaagaaaacagaacttgtgatcgacagtttgatttctggaatggtg--attctaaacaacaaat 54778680  T
Q  207 tttaaattgcggaggaatttgtctcaaacatctgcagatgcccgatagagaacaaattcaaagaagcacaccaaatacacgggtgacgggtatatagaag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  54778681 tttaaattgcggaggaatttgtctcaaacatctgcagatgcccgatagagaacaaattcaaagaagcacaccaaatacacgggt-------atatagaag 54778773  T
Q  307 catctctgggtaagagcataaaatat--gtttttcataaaagaaaacaacattacagtgagatagatggacatgagagatatatatgatgcaattagaaa 404  Q
    ||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  54778774 catctctggataagagcataaaatatatgtttttcataaaagaaaacaacattacagtgagataaatggacatgagagatatatatgatgcaattagaaa 54778873  T
Q  405 aaagaataagatattccccaaagcgaaacaaactgcataagtgcataacatgcattgtgcacagtttagaaatacaaattcagaacatataaggaaaact 504  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  54778874 aaagaataagatattccccaaagcaaaacaaactgcataagtgcataacatgcattgtgcacagtttacaaatacaaattcagaacatataaggaaaact 54778973  T
Q  505 acagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaataacatgcactctcccaaaagaaataccacacacaacta 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54778974 acagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaataacatgcactctcccaaaagaaataccacacacaacta 54779073  T
Q  605 aataactaaaaattgttagaaaacagtctgctagtagttgaaagaaagctatgaaacactgacacaaacactgcagatgacatagacacatcatgagaaa 704  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||    
T  54779074 aataactaaaaattgttagaaaacagtctgctagtaattgaaagaaagctatgaaacactgacactgacactgcacatgacatagacacatcatgagaaa 54779173  T
Q  705 atgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccgaccgacaagtgtgggacacgcctttgatcagaggtgtgtgccaca 804  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54779174 atgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccgaccgacaagtgtgggacacgcctttgatcagaggtgtgtgccaca 54779273  T
Q  805 aagaaagaaagaccggttgaaactaggcaaaataataatatacaaataaaagaccttataatactctagttcctatcacaaaaatgcagagctaagaatg 904  Q
    ||||||||||||| |||||||||||||   ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54779274 aagaaagaaagactggttgaaactagg---aaacataatatacaaataaaagaccttataatactctagttcctatcacaaaaatgcagagctaagaatg 54779370  T
Q  905 ggaaggaatnnnnnnncagcatttaaactttcacacataggtattcaactaaaaaccacttgtgtataaccaggcccgg-cctgaggggtgcaaagtgca 1003  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||    
T  54779371 ggaaggaataaaaaaacagcatttaaactttcacacataggtattcaactaaaaaccacttgtgtataaccaggcccggccctgaggg------agtgca 54779464  T
Q  1004 aacagctcaaccgagctgggc 1024  Q
    |||||||||||||||||||||    
T  54779465 aacagctcaaccgagctgggc 54779485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 7 - 909
Target Start/End: Complemental strand, 54790662 - 54789784
Alignment:
Q  7 aaagggtggatggaatatgctagttaatttttaaaaaatagatatcacattcccatctataacaccaatccacataccctaaaaaaggtcactttcacag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54790662 aaagggtggatggaatatgctagttaatttttaaaaaatagatatcacattcccatctataacaccaatccacataccctaaaaaaggtcactttcacag 54790563  T
Q  107 aatatgaataggtgaaaataaataaagttggttgaaaaagaaaacagaacttgtgatcgacagtttgatttctggaatggtgtgattctaaacaacaaat 206  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  54790562 aatatgaataggtgaaaataaataaagttggttgaaaaggaaaacagaacttgtgatcgacagtttgatttctggaatggtg--attctaaacaacaaat 54790465  T
Q  207 tttaaattgcggaggaatttgtctcaaacatctgcagatgcccgatagagaacaaattcaaagaagcacaccaaatacacgggtgacgggtatatagaag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  54790464 tttaaattgcggaggaatttgtctcaaacatctgcagatgcccgatagagaacaaattcaaagaagcacaccaaatacacgggt-------atatagaag 54790372  T
Q  307 catctctgggtaagagcataaaatat--gtttttcataaaagaaaacaacattacagtgagatagatggacatgagagatatatatgatgcaattagaaa 404  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54790371 catctctggataagagcataaaatatatgtttttcataaaagaaaacaacattacagtgagatagatggacatgagagatatatatgatgcaattagaaa 54790272  T
Q  405 aaagaataagatattccccaaagcgaaacaaactgcataagtgcataacatgcattgtgcacagtttagaaatacaaattcagaacatataaggaaaact 504  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  54790271 aaagaataagatattccccaaagcaaaacaaactgcataagtgcataacatgcattgtgcacagtttacaaatacaaattcagaacatataaggaaaact 54790172  T
Q  505 acagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaataacatgcactctcccaaaagaaataccacacacaacta 604  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  54790171 acagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaatgacatgcactctcgcaaaagaaaaaccacacacaacta 54790072  T
Q  605 aataactaaaaattgttagaaaacagtctgctagtagttgaaagaaagctatgaaacactgacacaaacactgcagatgacatagacacatcatgagaaa 704  Q
    ||||||||||||||||||||| ||||||||| | || |||||||||||||||||||||||   ||| |||||  | |  |||||||||||| |||||||     
T  54790071 aataactaaaaattgttagaatacagtctgcaaataattgaaagaaagctatgaaacact--aacagacacttgacacaacatagacacataatgagaac 54789974  T
Q  705 atgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccgaccgacaagtgtgggacacgcctttgatcagaggtgt--gtgcca 802  Q
    ||||||||||||||||||| ||||||||||| |||| |||||||||  ||||||||||||| |||                |||||||||||  ||||||    
T  54789973 atgaattatttgaacgtaaccacatgtgtcaatgtcgtgttagtgttggacaccgaccgac-agt----------------atcagaggtgttggtgcca 54789891  T
Q  803 caaagaaagaaagaccggttgaaactaggcaaaataataatatacaaataaaagaccttataatactctagttcctatcacaaaaatgcagagctaagaa 902  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  54789890 caaagaaagaaagactggttgaaactaggcaaaataataatatacaaataaaagaccttataataccctagttcctatcacaaaaatgcagagctaagaa 54789791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 17 - 908
Target Start/End: Complemental strand, 52283314 - 52282415
Alignment:
Q  17 tggaatatgctagttaatttttaaaaaatagatatcacattcccatctataacaccaatccacataccctaaaaaaggtcactttcacagaatatgaata 116  Q
    ||||||||||  ||||||||| |||||| ||||||| ||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  52283314 tggaatatgcaggttaattttaaaaaaagagatatcccattccattctataacaccaatccacataccctaaaaaaggacactttcacagaatatgaata 52283215  T
Q  117 ggtgaaaataaataaagttggttgaaaaagaaaacagaacttgtgatcgacagtttgatttctggaatggtgtgattctaaacaacaaattttaaattgc 216  Q
    ||| |||||||||||||||||||||||||||||||||||||||| || |||| ||||| || ||||||||||  ||||||||||||||||||||||||||    
T  52283214 ggttaaaataaataaagttggttgaaaaagaaaacagaacttgtcattgacaatttgacttttggaatggtg--attctaaacaacaaattttaaattgc 52283117  T
Q  217 ggaggaatttgtctcaaacatctgcagatgcccgatagagaacaaattcaaagaagcacaccaaatacacgggtgacgggtatatagaagcatctctggg 316  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||       ||| |||||||||||| |     
T  52283116 ggaggaatttgtctcaaacatttgcagatgcccgatagagaacaaattcaaagaagcacaccaaatacacaggt-------ataaagaagcatctctcga 52283024  T
Q  317 taagagcataaaatat--gtttttcataaaagaaaacaacattacagtgagatagatggacatgagagatatatatgatgcaattagaaaaaagaataag 414  Q
    |||| |||||||||||  ||||| |||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||    
T  52283023 taagggcataaaatatatgttttacataaaagaaaacaacattatagtgagatagatagacatgagagatatacatgatgcaattaggaaaaagaataag 52282924  T
Q  415 atattccccaaagcgaaacaaact-----gcataagtgcataacatgcattgtgcacagtttagaaatacaaattcagaacatataaggaaaactacagc 509  Q
    |||| ||||| ||| |||||||||     ||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||    
T  52282923 atatcccccagagcaaaacaaactaaactgcataagtgcataacatgcattgtgcacaatatacaaatacaaattcagaacatataaggaaaactacagc 52282824  T
Q  510 catgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaataacatgcact---ctcccaaaagaaataccacacacaactaaa 606  Q
    |||||||||||||||| ||||||    ||| |||||||||||||||||||||||| |||||||||||   ||||||||||||| ||||||||||||||||    
T  52282823 catgcatgaagcagagatacatc---gtgcgctacttattaaaaatatagattcagtaacatgcactctcctcccaaaagaaaaaccacacacaactaaa 52282727  T
Q  607 taactaaaaattgttagaaaacagtctgctagtagttgaaagaaagctatgaaacactgacacaaacactgcagatgacatagacacatcat-gagaaaa 705  Q
    |||||||||||||||| || ||||||||||  || ||||||||||||||||||||||||||| |||||||| | | ||||||||||| |||| |||| ||    
T  52282726 taactaaaaattgttaaaatacagtctgcttctaattgaaagaaagctatgaaacactgacataaacactggacacgacatagacacgtcatggagagaa 52282627  T
Q  706 tgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccgaccgacaagtgtggg-------acacgcctttgatcagaggtgt-- 796  Q
     |||||||||| || ||||||||||||||||| || |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||      
T  52282626 cgaattatttgtacataatcacatgtgtcagtttcgtgttagtgtccgacaccgaccgacaagtgtgggacactgaacacgcctttgatcagaggtgttg 52282527  T
Q  797 gtgccacaaagaaagaaagaccggttgaaactaggcaaaataataatatacaaataaaagaccttataatactctagttcctatcacaaaaatgcagagc 896  Q
    |||||||| || ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  52282526 gtgccacagagtaagaaagactggttgaaactaggaaaaataataatatacaaataaaagaccttataataccctagttgctatcacaaaaatgcagagc 52282427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 698 - 732
Target Start/End: Complemental strand, 843184 - 843150
Alignment:
Q  698 tgagaaaatgaattatttgaacgtaatcacatgtg 732  Q
    |||||||||||||||||||||||||||||||||||    
T  843184 tgagaaaatgaattatttgaacgtaatcacatgtg 843150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 925 - 959
Target Start/End: Complemental strand, 54789756 - 54789722
Alignment:
Q  925 atttaaactttcacacataggtattcaactaaaaa 959  Q
    |||||||||||||||||||||||||||||||||||    
T  54789756 atttaaactttcacacataggtattcaactaaaaa 54789722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 169; Significance: 4e-90; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 568 - 909
Target Start/End: Complemental strand, 19296149 - 19295825
Alignment:
Q  568 acatgcactctcccaaaagaaataccacacacaactaaataactaaaaattgttagaaaacagtctgctagtagttgaaagaaagctatgaaacactgac 667  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||||||||||||||||| ||    
T  19296149 acatgcactctcgcaaaagaaaaaccacacacaactaaataactaaaaattgttagaatacagtctgcaaataattgaaagaaagctatgaaacactaac 19296050  T
Q  668 acaaacactgcagatgacatagacacatcatgagaaaatgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccgaccgacaa 767  Q
    | |  ||||  | |  |||||||||||| ||||||| ||||||||||||||||||| ||||||||||| |||| |||||||||  ||||||||||||||     
T  19296049 aga--cacttgacacaacatagacacataatgagaacatgaattatttgaacgtaaccacatgtgtcaatgtcgtgttagtgttggacaccgaccgaca- 19295953  T
Q  768 gtgtgggacacgcctttgatcagaggtgt--gtgccacaaagaaagaaagaccggttgaaactaggcaaaataataatatacaaataaaagaccttataa 865  Q
      ||              |||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19295952 --gt--------------atcagaggtgttggtgccacaaagaaagaaagactggttgaaactaggcaaaataataatatacaaataaaagaccttataa 19295869  T
Q  866 tactctagttcctatcacaaaaatgcagagctaagaatgggaag 909  Q
    ||| |||||||||||||||||||||||||||||||||| |||||    
T  19295868 taccctagttcctatcacaaaaatgcagagctaagaataggaag 19295825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 925 - 959
Target Start/End: Complemental strand, 19295797 - 19295763
Alignment:
Q  925 atttaaactttcacacataggtattcaactaaaaa 959  Q
    |||||||||||||||||||||||||||||||||||    
T  19295797 atttaaactttcacacataggtattcaactaaaaa 19295763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 702 - 732
Target Start/End: Original strand, 3556317 - 3556347
Alignment:
Q  702 aaaatgaattatttgaacgtaatcacatgtg 732  Q
    |||||||||||||||||||||||||||||||    
T  3556317 aaaatgaattatttgaacgtaatcacatgtg 3556347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 698 - 760
Target Start/End: Complemental strand, 22745588 - 22745526
Alignment:
Q  698 tgagaaaatgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccga 760  Q
    |||||||||||||||||| |||||||| |||||| ||||||||||||| ||||| ||||||||    
T  22745588 tgagaaaatgaattatttaaacgtaatgacatgtttcagtgtcatgttggtgtcggacaccga 22745526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 698 - 733
Target Start/End: Original strand, 6074043 - 6074078
Alignment:
Q  698 tgagaaaatgaattatttgaacgtaatcacatgtgt 733  Q
    ||||||||||||||||||||||||||||| ||||||    
T  6074043 tgagaaaatgaattatttgaacgtaatcatatgtgt 6074078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 698 - 733
Target Start/End: Original strand, 6074529 - 6074564
Alignment:
Q  698 tgagaaaatgaattatttgaacgtaatcacatgtgt 733  Q
    ||||||||||||||| ||||||||||||||||||||    
T  6074529 tgagaaaatgaattagttgaacgtaatcacatgtgt 6074564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 702 - 736
Target Start/End: Complemental strand, 585759 - 585725
Alignment:
Q  702 aaaatgaattatttgaacgtaatcacatgtgtcag 736  Q
    ||||||||||| |||||||||||||||||||||||    
T  585759 aaaatgaattaattgaacgtaatcacatgtgtcag 585725  T

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Target: chr2 (Bit Score: 36; Significance: 0.0000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 698 - 741
Target Start/End: Complemental strand, 21186674 - 21186631
Alignment:
Q  698 tgagaaaatgaattatttgaacgtaatcacatgtgtcagtgtca 741  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||    
T  21186674 tgagaaagtgaattatttgaacgtaatcacatgtgtcggtgtca 21186631  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 698 - 736
Target Start/End: Complemental strand, 26144366 - 26144328
Alignment:
Q  698 tgagaaaatgaattatttgaacgtaatcacatgtgtcag 736  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  26144366 tgagaaaattaattatttgaacggaatcacatgtgtcag 26144328  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 702 - 759
Target Start/End: Complemental strand, 25384537 - 25384480
Alignment:
Q  702 aaaatgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccg 759  Q
    ||||||||||||  ||||| ||||||||||||||||||| ||  |||||| |||||||    
T  25384537 aaaatgaattatgggaacggaatcacatgtgtcagtgtcgtgccagtgtcagacaccg 25384480  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 700 - 761
Target Start/End: Complemental strand, 35198272 - 35198211
Alignment:
Q  700 agaaaatgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccgac 761  Q
    ||||||||||||| ||||| ||||||||||||| | ||||| ||||  |||| |||||||||    
T  35198272 agaaaatgaattaattgaatgtaatcacatgtgacggtgtcgtgttgttgtcggacaccgac 35198211  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 702 - 739
Target Start/End: Complemental strand, 37232193 - 37232156
Alignment:
Q  702 aaaatgaattatttgaacgtaatcacatgtgtcagtgt 739  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  37232193 aaaatgaattatttgaacataatcacatgtgtcggtgt 37232156  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 698 - 739
Target Start/End: Complemental strand, 18268048 - 18268007
Alignment:
Q  698 tgagaaaatgaattatttgaacgtaatcacatgtgtcagtgt 739  Q
    ||||||||||||||| ||||||||||||||||||||| ||||    
T  18268048 tgagaaaatgaattaattgaacgtaatcacatgtgtcggtgt 18268007  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 698 - 734
Target Start/End: Original strand, 21768622 - 21768658
Alignment:
Q  698 tgagaaaatgaattatttgaacgtaatcacatgtgtc 734  Q
    |||||||||||||||||||||||||| ||||||||||    
T  21768622 tgagaaaatgaattatttgaacgtaaccacatgtgtc 21768658  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 698 - 737
Target Start/End: Complemental strand, 5457263 - 5457224
Alignment:
Q  698 tgagaaaatgaattatttgaacgtaatcacatgtgtcagt 737  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  5457263 tgagaaaatcaattatttgaacgtaatcacacgtgtcagt 5457224  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 702 - 741
Target Start/End: Original strand, 28525028 - 28525067
Alignment:
Q  702 aaaatgaattatttgaacgtaatcacatgtgtcagtgtca 741  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  28525028 aaaatgaattaattgaatgtaatcacatgtgtcagtgtca 28525067  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 698 - 739
Target Start/End: Original strand, 47542551 - 47542592
Alignment:
Q  698 tgagaaaatgaattatttgaacgtaatcacatgtgtcagtgt 739  Q
    |||||||||||| |||||||| ||||||||||||||| ||||    
T  47542551 tgagaaaatgaactatttgaatgtaatcacatgtgtcggtgt 47542592  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 698 - 739
Target Start/End: Original strand, 47542770 - 47542811
Alignment:
Q  698 tgagaaaatgaattatttgaacgtaatcacatgtgtcagtgt 739  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||    
T  47542770 tgagataatgaattatttgaatgtaatcacatgtgtcggtgt 47542811  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 698 - 739
Target Start/End: Original strand, 47542989 - 47543030
Alignment:
Q  698 tgagaaaatgaattatttgaacgtaatcacatgtgtcagtgt 739  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||    
T  47542989 tgagataatgaattatttgaatgtaatcacatgtgtcggtgt 47543030  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 698 - 739
Target Start/End: Original strand, 47556436 - 47556477
Alignment:
Q  698 tgagaaaatgaattatttgaacgtaatcacatgtgtcagtgt 739  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||    
T  47556436 tgagataatgaattatttgaatgtaatcacatgtgtcggtgt 47556477  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 698 - 734
Target Start/End: Original strand, 20204255 - 20204291
Alignment:
Q  698 tgagaaaatgaattatttgaacgtaatcacatgtgtc 734  Q
    ||||||||||||| |||||||||||||||||||||||    
T  20204255 tgagaaaatgaatcatttgaacgtaatcacatgtgtc 20204291  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 700 - 741
Target Start/End: Original strand, 8093842 - 8093883
Alignment:
Q  700 agaaaatgaattatttgaacgtaatcacatgtgtcagtgtca 741  Q
    ||||||||||| |||||||  |||||||||||||||||||||    
T  8093842 agaaaatgaatgatttgaatataatcacatgtgtcagtgtca 8093883  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 698 - 733
Target Start/End: Original strand, 9895163 - 9895198
Alignment:
Q  698 tgagaaaatgaattatttgaacgtaatcacatgtgt 733  Q
    ||||||||| ||||||||||||||||||||||||||    
T  9895163 tgagaaaataaattatttgaacgtaatcacatgtgt 9895198  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 698 - 741
Target Start/End: Complemental strand, 10392957 - 10392914
Alignment:
Q  698 tgagaaaatgaattatttgaacgtaatcacatgtgtcagtgtca 741  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||||    
T  10392957 tgagaaaatgaattatttgaacgtactcagatgtgtcggtgtca 10392914  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 698 - 733
Target Start/End: Original strand, 15086714 - 15086749
Alignment:
Q  698 tgagaaaatgaattatttgaacgtaatcacatgtgt 733  Q
    ||||||| ||||||||||||||||||||||||||||    
T  15086714 tgagaaagtgaattatttgaacgtaatcacatgtgt 15086749  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 702 - 743
Target Start/End: Complemental strand, 4991185 - 4991144
Alignment:
Q  702 aaaatgaattatttgaacgtaatcacatgtgtcagtgtcatg 743  Q
    ||||||||||| ||||| |||||||||||||||| |||||||    
T  4991185 aaaatgaattaattgaatgtaatcacatgtgtcattgtcatg 4991144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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