View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4364-Insertion-4 (Length: 967)
Name: NF4364-Insertion-4
Description: NF4364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4364-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 787; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 787; E-Value: 0
Query Start/End: Original strand, 8 - 858
Target Start/End: Original strand, 28250386 - 28251236
Alignment:
| Q |
8 |
tatgtaatcagcgcggctgcaatggttggaggcttagcgccgcgctgtttcatacaagcgatcactctactgaagaaatcaatatcaagaacagctagtt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28250386 |
tatgtaatcagcgcggctgcaatggttggaggcttagcgccgcgctgtttcatacaagcgatcactctactgaagaaatcaatatcaagaacagctagtt |
28250485 |
T |
|
| Q |
108 |
cctcagtccaccaattagcgggtgagcggctagggaaattcgcctcgctgcaggccttggcgcttgcagcttcaacacggcgtttcacgatgtttaggtc |
207 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28250486 |
cctcagtccaccaattagccggtgagcggctagggaaattcgcctcgctgcaggccttggcgcttgcagcttcaacacagcgtttcacgatgtttaggtc |
28250585 |
T |
|
| Q |
208 |
atcggcatagggaagaaggtggtggcaagacttgaggactgcaacggagccggtgagagtgaaaaaggcgaccttagagagaaattcgtcggtccggcca |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28250586 |
atcggcatagggaagaaggtggtggcaagacttgaggactgcaacggagccggtgagagtgaaaaaggcgaccttagagagaaattcgtcggtccggcca |
28250685 |
T |
|
| Q |
308 |
gcaaggttgttgtcacaatactgatcagtcatttggagaaactctgctgcacatcgtaaaactgcgacattatggactgttatctcgaagttgacgccat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28250686 |
gcaaggttgttgtcacaatactgatcagtcatttggagaaactctgctgcacatcgtaaaactgcgacattatggactgttatctcgaagttgacgccat |
28250785 |
T |
|
| Q |
408 |
aacagaatttagctgctttttcaaagattccaggacctcctggtatgtctgagagatctattctggtgagatgagtctcatctgattccattattagttt |
507 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28250786 |
aacagaatttagctgctttttcaaagattccagaacctcctggtatgtcagagagatctattctggtgagatgagtctcatctgattccattattagttt |
28250885 |
T |
|
| Q |
508 |
tctgatgtagttgctctttgccaccaacatgaactgcaatcatattcaaaactttaatacatttttacaataatcatatgaactaaaacaaccaaacaag |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28250886 |
tctgatgtagttgctctttgccaccaacatgaactgcaatcatattcaaaactttaatacatttttacaataatcatatgaactaaaacaactaaacaag |
28250985 |
T |
|
| Q |
608 |
ctatcaaacacaaacacgattctaataccgacacatgtaatcacacttattgatgttggacactaacacatgtcgagcactagacaaaccttcgatcaca |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28250986 |
ctatcaaacacaaacacgattctaataccgacacatgtaatcacacttattgatgttggacactaacacatgtcgaacactagacaaaccttcgatcaca |
28251085 |
T |
|
| Q |
708 |
agcggtgcaagtaaacaaattaatctatgaaacaatataattcacatgggtcnnnnnnnctgataccttgtggaggcagaaacgagcttctccaacttca |
807 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28251086 |
agcggtgcaagtaaacaaattaatctatg-aacaatataattcacatgggtcttttattctgataccttgtggaggcagaaacgagcttctccaacttca |
28251184 |
T |
|
| Q |
808 |
actataacatcagttggaacttcttgagag-aaaccctgcattaataatcaa |
858 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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|
| T |
28251185 |
actataacatcagttggaacttcttgagagaaaaccctgcaataataatcaa |
28251236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 898 - 966
Target Start/End: Original strand, 28251240 - 28251315
Alignment:
| Q |
898 |
aattgtagagtaagcatgtgtat---gatgcatgcatgaatttggaaatgg----atagagtcgagtttagtgtgt |
966 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| ||||||||||||| |
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| T |
28251240 |
aattgtagagtaagcatgtgtataatgatgcatgcatgaatttgaaaatggaataatagagttgagtttagtgtgt |
28251315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 28246049 - 28246108
Alignment:
| Q |
138 |
tagggaaattcgcctcgctgcaggccttggcgcttgcagcttcaacacggcgtttcacga |
197 |
Q |
| |
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||||||||||| | |||||||| |||||||| ||||| |||||||||| |||||| |||| |
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|
| T |
28246049 |
tagggaaattcacttcgctgcaagccttggcacttgctgcttcaacacagcgtttaacga |
28246108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 386 - 543
Target Start/End: Original strand, 32180369 - 32180526
Alignment:
| Q |
386 |
gttatctcgaagttgacgccataacagaatttagctgctttttcaaa-gattccaggacctcctggtatgtctgagagatctattctggtgagatgagtc |
484 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||| ||||| | ||| || || || || ||||| ||||| |||| ||||||||| | | |
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| T |
32180369 |
gttatctcgaagttgacgccgtaacagaatttagctgctttctcaaaagcttcttgg-ccgccggggatgtcggagaggtctaatctggtgagttcggat |
32180467 |
T |
|
| Q |
485 |
tcatctgattccattattagttttctgatgtagttgctctttgccaccaacatgaactg |
543 |
Q |
| |
|
|| | |||||||||||| || |||||||||||||||||||||||||||| ||||||||| |
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|
| T |
32180468 |
tcgtttgattccattatcagctttctgatgtagttgctctttgccaccagcatgaactg |
32180526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 32180075 - 32180196
Alignment:
| Q |
92 |
tcaagaacagctagttcctcagtccaccaattagcgggtgagcggctagggaaattcgcctcgctgcaggccttggcgcttgcagcttcaacacggcgtt |
191 |
Q |
| |
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|||||||| || || ||||| ||||||||||| | ||||| ||||||||||| || || || ||||| |||| | ||| |||| ||||||| ||||| |
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| T |
32180075 |
tcaagaacggcgagctcctccgtccaccaattcggaggtgatcggctagggaagtttgcttcattgcagacctttgagctgacagcgtcaacacagcgtt |
32180174 |
T |
|
| Q |
192 |
tcacgatgtttaggtcatcggc |
213 |
Q |
| |
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| ||||||||||| || ||||| |
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| T |
32180175 |
tgacgatgtttagctcgtcggc |
32180196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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