View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4364_high_1_N (Length: 503)
Name: NF4364_high_1_N
Description: NF4364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4364_high_1_N |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 2 - 503
Target Start/End: Original strand, 10143653 - 10144155
Alignment:
| Q |
2 |
aaacccatggagaaactggtccgggcaacattgtcatcatcctcacaaccacgaaggatgtggttgagcttctcgtcaagaagagacaatctttttgaat |
101 |
Q |
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| T |
10143653 |
aaacccatggagaaactggtccgggccacattgtcatcatcctcacaaccacgaaggatgtggttgagcttctcgtcaagaagagacaatctttttgaat |
10143752 |
T |
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| Q |
102 |
catcatccacagcttggtttgttgcatcattgacataaagtacacatgctattcgcctgttatgagtccaaacttcagctgcaatcacattgaattggaa |
201 |
Q |
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| T |
10143753 |
catcatccacagcttggtttgttgcatcattgacataaagtacacatgctattcgcctgttatgagtccaaacttcagctgcaatcacattgaattggaa |
10143852 |
T |
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| Q |
202 |
gctcgccaggacagctgatatctcagacaaaagacctgggcggtcccgaccaatgagctcaatggctgtatgatcaccaatggagtgaatgccaacccgt |
301 |
Q |
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| T |
10143853 |
gcttgccaggacagctgatatctcagacaaaagacctgggcggtcccgaccaatgagctcaatggctgtatgatcaccaatggagtgaatgccaacccgt |
10143952 |
T |
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| Q |
302 |
ttgccttcccaactcttcacaccttctgtgctcct-cctcactttggtcctagagcctatttaaatgttcacaactagttgatacaagggtgcgattctg |
400 |
Q |
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| T |
10143953 |
ttgccttcccaactcttcacaccttctgggctcttgcggccctttggtcctagagcctatttaaatgttcacaactagttgatacaagggtgcgattctg |
10144052 |
T |
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| Q |
401 |
ctttatgtaattatagaatataattaaatcatccaattcatatttagagtctgtttaggaaatagcagggtagatactagcaggaactcaatccactgtt |
500 |
Q |
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| T |
10144053 |
ctttatgtaattatagaatataattaaatcatccaattgatatttagagtctgtttaggaaatagcagggtagatactagcaggaactcaatcaactgtt |
10144152 |
T |
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| Q |
501 |
tct |
503 |
Q |
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| T |
10144153 |
tct |
10144155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 126 - 320
Target Start/End: Complemental strand, 40683776 - 40683582
Alignment:
| Q |
126 |
catcattgacataaagtacacatgctattcgcctgttatgagtccaaacttcagctgcaatcacattgaattggaagctcgccaggacagctgatatctc |
225 |
Q |
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|||||||||||||||| ||||| ||| ||| ||||||||||||||| ||||||||| ||| ||| || || |||| ||| || || ||||| |||||||| |
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| T |
40683776 |
catcattgacataaaggacacaagctgttctcctgttatgagtccatacttcagctacaaccacgttaaaatggaggctagcaagaacagcagatatctc |
40683677 |
T |
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| Q |
226 |
agacaaaagacctgggcggtcccgaccaatgagctcaatggctgtatgatcaccaatggagtgaatgccaacccgtttgccttcccaactcttca |
320 |
Q |
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|||||| ||||| || ||||| | || || |||||||| || |||||||||||| || || | ||||||||||||||| |||| |||||| |
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| T |
40683676 |
agacaacagaccaggccggtctctcccgattagctcaatcactatatgatcaccaacagaatgcaccccaacccgtttgcctgaccaattcttca |
40683582 |
T |
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