View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4364_high_2 (Length: 382)
Name: NF4364_high_2
Description: NF4364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4364_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 2 - 179
Target Start/End: Complemental strand, 17284873 - 17284696
Alignment:
| Q |
2 |
agagtgagggtcgggttattggcacaaagctagacttgtagctaaaggatactctcgacatcacataatttactataatgaggtgttcaatccagtagca |
101 |
Q |
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| T |
17284873 |
agagtgagggtccggttattggcacaaagctagacttgtagctaaaggatactctcgacatcacataatttactataatgaggtgttcgatccggtagca |
17284774 |
T |
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| Q |
102 |
agatgggataccattaggactatacctgttattgtagctagtaatgactgaaaagtttatcagctagatgtgaagaat |
179 |
Q |
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| T |
17284773 |
agatgggataccattaggactatacttgttattgtagctagtaatgactgaaaagtttatcagctagatgtgaagaat |
17284696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 208 - 364
Target Start/End: Complemental strand, 17284697 - 17284541
Alignment:
| Q |
208 |
atgtatatgtagatcaagctcttggctatcagaataaagagaagaagaaattgtataagctgatgaaagctcagtatggtctaaggaaagctcaaagggc |
307 |
Q |
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| T |
17284697 |
atgtatacgtagatcaacctcttagctatcagaataaagagaagaagaaattgtataagctgatgaaagctcagtatggtctaaggaaagctcaaagggc |
17284598 |
T |
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| Q |
308 |
atggtatagtaagatagattcnnnnnnngttaacggaaatttgacaaatgtcctcaa |
364 |
Q |
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| T |
17284597 |
atggtatagtaagatagattctttttttgttaacggaaatttgacaaatgtcctcaa |
17284541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 12794822 - 12794854
Alignment:
| Q |
25 |
acaaagctagacttgtagctaaaggatactctc |
57 |
Q |
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| T |
12794822 |
acaaggctagacttgtagctaaaggatactctc |
12794854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 275974 - 275936
Alignment:
| Q |
183 |
tttcttcatggtgagcttatggaacatgtatatgtagat |
221 |
Q |
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| T |
275974 |
tttcttcatggtgagcttatggaagatgtatatgtagat |
275936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 27444539 - 27444571
Alignment:
| Q |
25 |
acaaagctagacttgtagctaaaggatactctc |
57 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
27444539 |
acaaggctagacttgtagctaaaggatactctc |
27444571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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