View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4364_high_3 (Length: 373)
Name: NF4364_high_3
Description: NF4364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4364_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 145 - 305
Target Start/End: Original strand, 40393309 - 40393471
Alignment:
| Q |
145 |
tattatcatcaaatcaattgtactatccagtattacattcaatcggaataacaaagttattttgatatacaatgcattcttatccttgactgcaaatttt |
244 |
Q |
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| T |
40393309 |
tattatcatcaaatcaattgtcctatccaatgttatatgcaatgggaataacaaagttcttttgatatacaatccattcttatccttgactgcaaatttt |
40393408 |
T |
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| Q |
245 |
actgctttaattttatcaatagttatgagaaaatggctttg--atatattatctgcttatgca |
305 |
Q |
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| T |
40393409 |
acttctttcattttatcaatagttatgagaaaatggcattgatatatattatctgcttatgca |
40393471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 28111564 - 28111627
Alignment:
| Q |
15 |
gacagtgggtcagacaccaccatgtcatccaatttcctatacatggaactcaccgaaaaggaac |
78 |
Q |
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| T |
28111564 |
gacagtgggtcagacaccactatgtcatccaatttcctatacatggaactcaccgaaaaggaac |
28111627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 40383201 - 40383266
Alignment:
| Q |
77 |
actctctccatctaacattagggtgtcctattttagttttacaccattgaaatgcaataaataagg |
142 |
Q |
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| T |
40383201 |
actctctccgtctaacattagggtgtcctattttagttttacatgattgaaatgcaataaataagg |
40383266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 145 - 250
Target Start/End: Complemental strand, 52412202 - 52412097
Alignment:
| Q |
145 |
tattatcatcaaatcaattgtactatccagtattacattcaatcggaataacaaagttattttgatatacaatgcattcttatccttgactgcaaatttt |
244 |
Q |
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| T |
52412202 |
tattagcatcaaatcaattgtattgtccaatattatatgaaatgagaataaaaaagttattctgctatacaattcattcttattcttgactgcaaatttt |
52412103 |
T |
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| Q |
245 |
actgct |
250 |
Q |
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||||| |
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| T |
52412102 |
tctgct |
52412097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 279
Target Start/End: Complemental strand, 14677025 - 14676891
Alignment:
| Q |
145 |
tattatcatcaaatcaattgtactatccagtattacattcaatcggaataacaaagttattttgatatacaatgcattcttatccttgactgcaaatttt |
244 |
Q |
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| T |
14677025 |
tattatcaacaaatcaattgtactatccaatattatatgcaatgggaataataaagttctcttgatatacagtccacacttattcttggttgaaaatttt |
14676926 |
T |
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| Q |
245 |
actgctttaattttatcaatagttatgagaaaatg |
279 |
Q |
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| T |
14676925 |
acggttttactattgttaatagttatgaaaaaatg |
14676891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 34325896 - 34325847
Alignment:
| Q |
29 |
caccaccatgtcatccaatttcctatacatggaactcaccgaaaaggaac |
78 |
Q |
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| T |
34325896 |
caccaccaattcatccaatttcctatacatggaactcaccgaaaaggaac |
34325847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 281
Target Start/End: Original strand, 17667355 - 17667488
Alignment:
| Q |
148 |
tatcatcaaatcaattgtactatccagtattacattcaatcggaataacaaagttattttgatatacaatgcattcttatccttgactgcaaattttact |
247 |
Q |
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| T |
17667355 |
tatcaacaaatcaattatactatccaatattatatgcaatgggaataataaagttctcttgatatacagtcaacacttatacttggttgaaaattttacg |
17667454 |
T |
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| Q |
248 |
gctttaattttatcaatagttatgagaaaatggc |
281 |
Q |
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| T |
17667455 |
gttttactattgttaatagttatgaaaaaatggc |
17667488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 7773693 - 7773733
Alignment:
| Q |
210 |
tatacaatgcattcttatccttgactgcaaattttactgct |
250 |
Q |
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| T |
7773693 |
tatacaattcattcttattcttgactgcaaatttttctgct |
7773733 |
T |
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