View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4364_high_4 (Length: 359)

Name: NF4364_high_4
Description: NF4364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4364_high_4
NF4364_high_4
[»] chr6 (1 HSPs)
chr6 (13-359)||(175695-176039)


Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 359
Target Start/End: Complemental strand, 176039 - 175695
Alignment:
Q  13 agagttggtgcctaaagtgtgagccttaacttgagttttgtaaatttcattttgaaatattccacgagatatatagctagaaacagcaactaccttgtaa 112  Q
    |||||||||||||||||||||| |||||||||||||||||||||  ||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  176039 agagttggtgcctaaagtgtgaaccttaacttgagttttgtaaacatcattttgaa---ttccacgagatatatagctagaaacagcaactaccttgtaa 175943  T
Q  113 gtatgggtaaattgagcgtcatacccaatggtgtatgcaatttgtagacttttctcgaaatccaaagagggcgatatattgaatttggtggtacaagggt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  175942 gtatgggtaaattgagcgtcatacccaatggtgtatgcaatttgtagacttttctcgaaatccaaagagggcaatatattgaatttggtggtacaagggt 175843  T
Q  213 tccatagtagcggatcaccacagtcgaatctgtcatcgatgg-ttgaagacagatgatgccatcgcaagagtcagctatgatagcacgaatgttagaagg 311  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  175842 tccatagtagcggatcaccacagtcgaatctgtcatcgatggtttgaagacagatgatgccatcgcaagagtcagctatgatagcacgaatgttagaagg 175743  T
Q  312 atttagaggaaagttgagcttcatatcagggacgatggttgttgagtt 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  175742 atttagaggaaagttgagcttcatatcagggacgatggttgttgagtt 175695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University