View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4364_low_1 (Length: 516)
Name: NF4364_low_1
Description: NF4364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4364_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 12 - 500
Target Start/End: Complemental strand, 38102231 - 38101742
Alignment:
| Q |
12 |
atcatcaaactgtcttctaaaatcccaagaaattcttccagaaataagaaaatgatccctaccccacattttcttccactcaggtttttcaaccaaccaa |
111 |
Q |
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| T |
38102231 |
atcatcaaattgtcttctaaaatcccaagaaattcttccagaaataagaaaatgatccctaccccacattttcttccactcaggtttttcaaccaaccaa |
38102132 |
T |
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| Q |
112 |
ttaacaagttcaaaaccagaagaatctcttacagtaagattattaacccaaagaaaacgactaatgtcaagaccaatataagaaggaacaaaaactgcag |
211 |
Q |
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| T |
38102131 |
ttaacaagttcaaaaccagaagaatctcttacagtaagattattaacccaaagaaaacgactaatgtcaagaccaatataagaaggaacaaaaactgcag |
38102032 |
T |
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| Q |
212 |
aagctatagatgaatcatttgtcaaacattcataacttttcatcctattgtgaaaaat-acctccaacagaaactggtttgtagcataccaagtattgtt |
310 |
Q |
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| T |
38102031 |
aagctaaagatgaatcatttgtcaaacattcataacttttcatcctattgtgaaaaataacctccaacagaaactggtttgtagcataccaagtattgtt |
38101932 |
T |
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| Q |
311 |
tgggacaagaatatcattaaagttttgatttttaacctcaggacctaaacccatgttgtccatgtacggacacatgtttggtttgtcggttcctctagtt |
410 |
Q |
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| T |
38101931 |
tgggacaagaatatccttaaagttttgatttttaacctcaggacctaaacccatgttgtccatgtacggacacatgtttggtttgtcggttcctctagtt |
38101832 |
T |
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| Q |
411 |
aaaaattgacaattttgaagcaaatattggttgaaacgagaagggagattttgaatgaaaacatagcgaccagtgcatgaatctgagaca |
500 |
Q |
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| T |
38101831 |
aaaaattgacaattttgaagcaaatattggttgaaacgagaagggagattttgaatgaaaacatagcgaccagtgcatgaatctgagaca |
38101742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 126
Target Start/End: Complemental strand, 44960995 - 44960960
Alignment:
| Q |
91 |
tcaggtttttcaaccaaccaattaacaagttcaaaa |
126 |
Q |
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| T |
44960995 |
tcaggtttatcaaccaaccaattaacaagttcaaaa |
44960960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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