View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4365-Insertion-1 (Length: 1038)

Name: NF4365-Insertion-1
Description: NF4365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4365-Insertion-1
NF4365-Insertion-1
[»] chr5 (5 HSPs)
chr5 (462-885)||(8362515-8362936)
chr5 (766-878)||(8370400-8370512)
chr5 (752-880)||(8371798-8371926)
chr5 (919-952)||(8362460-8362493)
chr5 (557-694)||(8370587-8370726)
[»] chr7 (4 HSPs)
chr7 (174-242)||(20027477-20027545)
chr7 (15-72)||(20027655-20027712)
chr7 (176-239)||(12617923-12617986)
chr7 (263-312)||(44828667-44828716)
[»] chr8 (4 HSPs)
chr8 (174-242)||(6765062-6765130)
chr8 (174-242)||(6787487-6787555)
chr8 (12-72)||(6787686-6787746)
chr8 (14-72)||(6765258-6765316)
[»] scaffold0483 (1 HSPs)
scaffold0483 (14-72)||(3745-3803)
[»] scaffold0109 (1 HSPs)
scaffold0109 (14-72)||(48585-48643)
[»] scaffold0018 (2 HSPs)
scaffold0018 (174-239)||(126552-126617)
scaffold0018 (14-65)||(126093-126144)
[»] chr4 (2 HSPs)
chr4 (174-239)||(14694803-14694868)
chr4 (17-72)||(14694347-14694402)
[»] chr6 (3 HSPs)
chr6 (12-72)||(14647868-14647928)
chr6 (176-239)||(14648266-14648329)
chr6 (16-72)||(18099070-18099127)
[»] chr2 (1 HSPs)
chr2 (174-239)||(28619879-28619944)


Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 462 - 885
Target Start/End: Complemental strand, 8362936 - 8362515
Alignment:
Q  462 tgtggatttaaaccctaaccaagcttatcaaatgttcaagcaatgttttatcatctgaacaaattctatgaatcaaaatatataggagcggtgcaaaaac 561  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8362936 tgtggatttaaaccctaaccaagcttat---atgttcaagcaatgttttatcatctgaacaaattctatgaatcaaaatatataggagcggtgcaaaaac 8362840  T
Q  562 atcaaggaaaatggacaacattctgaagataatagagaaa-tgaatctcacactgagatatatttgaacagaagtttgagtgccaatttaaaaaatttga 660  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8362839 atcaaggaaaatggacaacattctgaagataatagagaaaatgaatctcacactgagatatatttgaacagaagtttgagtgccaatttaaaaaatttga 8362740  T
Q  661 ccaccttttatgtactaagtgtttggtaaatacttcaaaactaccagcataatttttgcannnnnnncattgcccatgttgtctaacgtgataatgaata 760  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  8362739 ccaccttttatgtcctaagtgtttagtaaatacttcaaaactaccagcataatttttgcatttttttcattgcccatgttgtctaacgtgataatgaata 8362640  T
Q  761 tcttgtgtctttatttttgtaatttctttgtagctcttttgtcgtactttgcacaaataccctgatcaacaaattatatatctaataagcaacaatgttc 860  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8362639 tcttgtgtctttatttttgtaatttctttatagctcttttgtcgtactttgcacaaataccctgatcaacaaattatatatctagtaagcaacaatgttc 8362540  T
Q  861 tacattcatttcttaacacatgttt 885  Q
    |||||||||||||||||||||||||    
T  8362539 tacattcatttcttaacacatgttt 8362515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 766 - 878
Target Start/End: Complemental strand, 8370512 - 8370400
Alignment:
Q  766 tgtctttatttttgtaatttctttgtagctcttttgtcgtactttgcacaaataccctgatcaacaaattatatatctaataagcaacaatgttctacat 865  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||| ||   |||||||||||||||||||| | ||||||||||||||||  ||    
T  8370512 tgtctttatttttgtaatttctttgtagatcttttgttgtactttgcacaactattatgatcaacaaattatatatccagtaagcaacaatgttctttat 8370413  T
Q  866 tcatttcttaaca 878  Q
    |||||||||||||    
T  8370412 tcatttcttaaca 8370400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 752 - 880
Target Start/End: Complemental strand, 8371926 - 8371798
Alignment:
Q  752 taatgaatatcttgtgtctttatttttgtaatttctttgtagctcttttgtcgtactttgcacaaataccctgatcaacaaattatatatctaataagca 851  Q
    |||| |||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||| | ||  |||||||||| |||||||||| | ||||||    
T  8371926 taataaatatcttgtgtctttctttttgtaatttctatgtagatcttttgttgtactttgcacgactattctgatcaacagattatatatccagtaagca 8371827  T
Q  852 acaatgttctacattcatttcttaacaca 880  Q
    ||||||||||  ||| |||||||||||||    
T  8371826 acaatgttctttatttatttcttaacaca 8371798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 919 - 952
Target Start/End: Complemental strand, 8362493 - 8362460
Alignment:
Q  919 ggtttacttttgagaaagtaaagcaaccaatttg 952  Q
    ||||||||||||||||||||||||||||||||||    
T  8362493 ggtttacttttgagaaagtaaagcaaccaatttg 8362460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 694
Target Start/End: Complemental strand, 8370726 - 8370587
Alignment:
Q  557 aaaacatcaaggaaaatggacaacattctgaagataatagagaaa-tgaatctcacactgagatatatttgaacagaagtttgagtgccaattt-aaaaa 654  Q
    |||| ||||||||||| |  |||||||||||||||  | |||||| || | |||| ||||||||||||||||||| ||| || ||||||| |||  ||      
T  8370726 aaaatatcaaggaaaaggaccaacattctgaagattttggagaaaatggacctcaaactgagatatatttgaacaaaagcttaagtgccagtttggaagt 8370627  T
Q  655 atttgaccaccttttatgtactaagtgtttggtaaatact 694  Q
     ||||||| |||||| ||| | || |||||||||||||||    
T  8370626 ttttgaccgccttttttgttccaaatgtttggtaaatact 8370587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 4e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 20027545 - 20027477
Alignment:
Q  174 actttacctcaagattcaggaaaatgaggtttcttggtcattccacgtatgatcctattgcatctccaa 242  Q
    |||||||||||||||| ||| |||||||||||||||| ||| |||| |||||| |||||||||||||||    
T  20027545 actttacctcaagatttagggaaatgaggtttcttggccatgccacatatgattctattgcatctccaa 20027477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 20027712 - 20027655
Alignment:
Q  15 cattaccattgcatttgtatattgcaggaatctatgtgtaattgattcagttagtgat 72  Q
    |||||||||||  ||||||| |||||||||||||||||||| ||||| ||||||||||    
T  20027712 cattaccattgtctttgtatgttgcaggaatctatgtgtaactgattgagttagtgat 20027655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 12617986 - 12617923
Alignment:
Q  176 tttacctcaagattcaggaaaatgaggtttcttggtcattccacgtatgatcctattgcatctc 239  Q
    |||||||||||||| ||| |||||||||||||| | ||| |||| |||| ||||||||||||||    
T  12617986 tttacctcaagattaagggaaatgaggtttctttgccatgccacatatgttcctattgcatctc 12617923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 44828716 - 44828667
Alignment:
Q  263 actatttaatatattaggaaggaatatgaggaacatggttcaactgagga 312  Q
    ||||||||||||||||||| || || ||| |||||||||| |||||||||    
T  44828716 actatttaatatattaggacggtatttgatgaacatggtttaactgagga 44828667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 6765130 - 6765062
Alignment:
Q  174 actttacctcaagattcaggaaaatgaggtttcttggtcattccacgtatgatcctattgcatctccaa 242  Q
    |||||||||||||||| ||| |||||||||||||| | ||| |||| |||| |||||||||||||||||    
T  6765130 actttacctcaagattaagggaaatgaggtttctttgccatgccacatatgttcctattgcatctccaa 6765062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 6787555 - 6787487
Alignment:
Q  174 actttacctcaagattcaggaaaatgaggtttcttggtcattccacgtatgatcctattgcatctccaa 242  Q
    |||||||||||||||| ||| ||||||||||||||   ||| |||| |||| |||||||||||||||||    
T  6787555 actttacctcaagattaagggaaatgaggtttcttttccatgccacatatgttcctattgcatctccaa 6787487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 6787746 - 6787686
Alignment:
Q  12 catcattaccattgcatttgtatattgcaggaatctatgtgtaattgattcagttagtgat 72  Q
    ||||||||||||||| ||| ||| |||||||| ||||| || |||||||||||| ||||||    
T  6787746 catcattaccattgcctttatatgttgcaggagtctatatgaaattgattcagtcagtgat 6787686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 6765316 - 6765258
Alignment:
Q  14 tcattaccattgcatttgtatattgcaggaatctatgtgtaattgattcagttagtgat 72  Q
    ||||||||||||| ||| ||| |||| ||||||||| || |||||||||||| ||||||    
T  6765316 tcattaccattgcctttatatgttgctggaatctatatgaaattgattcagtcagtgat 6765258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 3745 - 3803
Alignment:
Q  14 tcattaccattgcatttgtatattgcaggaatctatgtgtaattgattcagttagtgat 72  Q
    ||||||||||||| ||| ||| ||||||||||||||||| |||||||||||| ||||||    
T  3745 tcattaccattgcctttatatgttgcaggaatctatgtgaaattgattcagtcagtgat 3803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 48585 - 48643
Alignment:
Q  14 tcattaccattgcatttgtatattgcaggaatctatgtgtaattgattcagttagtgat 72  Q
    ||||||||||||| ||| ||| ||||||||||||||||| |||||||||||| ||||||    
T  48585 tcattaccattgcctttatatgttgcaggaatctatgtgaaattgattcagtcagtgat 48643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 126552 - 126617
Alignment:
Q  174 actttacctcaagattcaggaaaatgaggtttcttggtcattccacgtatgatcctattgcatctc 239  Q
    |||||||||||||||| ||| |||||||||||||| | ||| |||| |||| ||||||||||||||    
T  126552 actttacctcaagattaagggaaatgaggtttctttgccatgccacatatgttcctattgcatctc 126617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 126093 - 126144
Alignment:
Q  14 tcattaccattgcatttgtatattgcaggaatctatgtgtaattgattcagt 65  Q
    ||||||||||||| ||| ||| ||||||||||||||||| ||||||| ||||    
T  126093 tcattaccattgcctttatatgttgcaggaatctatgtgaaattgatgcagt 126144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 14694803 - 14694868
Alignment:
Q  174 actttacctcaagattcaggaaaatgaggtttcttggtcattccacgtatgatcctattgcatctc 239  Q
    ||||||||||||||||  || |||||||||||||| ||||| |||| |||| ||||||||||||||    
T  14694803 actttacctcaagattatgggaaatgaggtttctttgtcatgccacatatgttcctattgcatctc 14694868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 14694347 - 14694402
Alignment:
Q  17 ttaccattgcatttgtatattgcaggaatctatgtgtaattgattcagttagtgat 72  Q
    |||||||||| ||| ||| ||||||||||||||||| |||||||||||| ||||||    
T  14694347 ttaccattgcctttatatgttgcaggaatctatgtgaaattgattcagtcagtgat 14694402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 14647868 - 14647928
Alignment:
Q  12 catcattaccattgcatttgtatattgcaggaatctatgtgtaattgattcagttagtgat 72  Q
    ||||||||||||||| ||| ||| |||||| |||||||||| |||||||||||| ||||||    
T  14647868 catcattaccattgcctttatatgttgcagaaatctatgtgaaattgattcagtcagtgat 14647928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 14648266 - 14648329
Alignment:
Q  176 tttacctcaagattcaggaaaatgaggtttcttggtcattccacgtatgatcctattgcatctc 239  Q
    |||||||||||||| ||| |||||||||||||| | ||| |||| |||| ||||||||||||||    
T  14648266 tttacctcaagattaagggaaatgaggtttctttgccatgccacatatgttcctattgcatctc 14648329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 18099127 - 18099070
Alignment:
Q  16 attaccattgcatttgtatattgcaggaatctatgtgt-aattgattcagttagtgat 72  Q
    ||||||||||| ||||||| || ||||||||||||||| |||||||||||| ||||||    
T  18099127 attaccattgcctttgtatgttacaggaatctatgtgtaaattgattcagtcagtgat 18099070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 28619944 - 28619879
Alignment:
Q  174 actttacctcaagattcaggaaaatgaggtttcttggtcattccacgtatgatcctattgcatctc 239  Q
    ||||||||| |||||| ||| ||| |||||||||| | ||| |||| |||| ||||||||||||||    
T  28619944 actttacctgaagattaagggaaacgaggtttctttgccatgccacatatgttcctattgcatctc 28619879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University