View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4365-Insertion-11 (Length: 461)
Name: NF4365-Insertion-11
Description: NF4365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4365-Insertion-11 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 8 - 461
Target Start/End: Original strand, 580056 - 580509
Alignment:
| Q |
8 |
caaactctccttacatgattatcaactttcttttgatttcactatcaggcttaaaagaatgcagaattttgccacctttgttgacagagcgcttcttctt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
580056 |
caaactctccttacatgattatcaactttcttttgatttcactatcaggcttaaaagaatgcagaatttttccacctttgttgacagagcgcttcttctt |
580155 |
T |
|
| Q |
108 |
aacgatagtttagccatggatcacgtttctctttttctctgtactttgtataattggtcttttctagattcatggttatcaaacatctttaagcggagag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
580156 |
aacgatagtttagccatggatcacgtttctcttttcctctttactttgtataattggtctcttctagattcatggttatcaaacatctttaagcggagag |
580255 |
T |
|
| Q |
208 |
ttaaaattcttcaaatccattcnnnnnnncaaatcccattctccgttctcgcttctcattctcttttcaataactttttgttgttagaagaattggagtt |
307 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
580256 |
ttaaaattcttcaaatccattctttttttcaaatcccattctccgttctcgcttctcattctcttttcaataactttttgttgttagaagaattggagtt |
580355 |
T |
|
| Q |
308 |
gcttactgattccatttcctttattaatgttcctatgtacgatgaagaattgaaattgcttcgaaattcttttaattccgttgatgttcccgctcccagc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
580356 |
gcttactgattccatttcctttattaatgttcctatgtacgatgaagaattgaaattgcttcgaaattcttttaattccgttgatgttcccgctcccagc |
580455 |
T |
|
| Q |
408 |
aaatatattctatttcgaaacttgaaaattctaaacttgtgtggaatcgacttt |
461 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
580456 |
aaatatattgtatttcgaaacttgaaaattctcaacttgtgtggaatcaacttt |
580509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 1213863 - 1213916
Alignment:
| Q |
258 |
gcttctcattctcttttcaataactttttgttgttagaagaattggagttgctt |
311 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| | |||||||||||||| |||||| |
|
|
| T |
1213863 |
gcttctgattctcttttcaaaaactttttgctattagaagaattggaattgctt |
1213916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 310
Target Start/End: Complemental strand, 8193171 - 8193030
Alignment:
| Q |
169 |
ttctagattcatggttatcaaacatctttaagcggagagttaaaattcttcaaatccattcnnnnnnncaaatcccattctccgttctcgcttctcattc |
268 |
Q |
| |
|
|||||||| |||||| || |||||||| || || |||||||||| ||||| ||||||||| ||| || ||||||||||||| |||||| |||| |
|
|
| T |
8193171 |
ttctagatatatggttctctaacatcttcaaccgcagagttaaaaatcttcgaatccattcgcagtttcaactctcattctccgttcttgcttctgattc |
8193072 |
T |
|
| Q |
269 |
tcttttcaataactttttgttgttagaagaattggagttgct |
310 |
Q |
| |
|
||| || || || || | || |||||||||||||| ||||| |
|
|
| T |
8193071 |
tctatttaaaaatttcatattattagaagaattggaattgct |
8193030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University