View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4365-Insertion-13 (Length: 206)
Name: NF4365-Insertion-13
Description: NF4365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4365-Insertion-13 |
 | |
|
| [»] chr4 (9 HSPs) |
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| [»] chr8 (4 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (5 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 14174011 - 14174208
Alignment:
| Q |
7 |
aacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaa |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14174011 |
aacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgaga--gagtggagagaa |
14174108 |
T |
|
| Q |
107 |
tattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174109 |
tattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca |
14174208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 14178765 - 14178962
Alignment:
| Q |
7 |
aacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaa |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
14178765 |
aacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgaga--gagtggagagaa |
14178862 |
T |
|
| Q |
107 |
tattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178863 |
tattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca |
14178962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 28611859 - 28611662
Alignment:
| Q |
7 |
aacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaa |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
28611859 |
aacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagag--tggagagaa |
28611762 |
T |
|
| Q |
107 |
tattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28611761 |
tattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttttcacgttaaatattggtgttca |
28611662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 7 - 204
Target Start/End: Complemental strand, 28607097 - 28606902
Alignment:
| Q |
7 |
aacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaa |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
28607097 |
aacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagag--tggagagaa |
28607000 |
T |
|
| Q |
107 |
tattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgtt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28606999 |
tattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttttcacgttaaatattggtgtt |
28606902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 44161660 - 44161855
Alignment:
| Q |
7 |
aacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaa |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
44161660 |
aacttctaggtgctataaaataatagcattagaatagaagtaggtcttacgggaaacactatattgtatctcttgtgtgtgtaagagag--tggagagaa |
44161757 |
T |
|
| Q |
107 |
tattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca |
206 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
44161758 |
t--tgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca |
44161855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 48826988 - 48826793
Alignment:
| Q |
7 |
aacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaa |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||| | |||||| |
|
|
| T |
48826988 |
aacttctaggtgctataaaataatagcattcaaataggagtgaatctcacgggaaacactatattgtatctcttgtgtgtgt--aagagagcgaagagaa |
48826891 |
T |
|
| Q |
107 |
tattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48826890 |
tattgtaatattctttaatatagtggaatatttttcggag-ttgtcccgtgatttttccctcggtattagaggattttccacgttaaatattggtgttc |
48826793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 11104543 - 11104738
Alignment:
| Q |
7 |
aacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaa |
106 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| |||||| ||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
11104543 |
aacttctaggtgttataaaataatagcatttgaataggagtgggtctcacgggaaacactatattgtatctctt---tgtgtgtaagagagtggagagaa |
11104639 |
T |
|
| Q |
107 |
tattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca |
206 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||||||| || ||||| ||||||||| ||||| | |||||||||||||||||| |
|
|
| T |
11104640 |
tattgtaatattcttagatatggtggaatatttttcggagtttgtcccgtggt-ttaccctcgatattagaggattttctatgttaaatattggtgttca |
11104738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 48708256 - 48708155
Alignment:
| Q |
100 |
gagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattg |
199 |
Q |
| |
|
||||||||||||||||||| ||||||||| || ||||||||| |||||||||| |||||| |||| || ||||||| || ||||| || ||||||||||| |
|
|
| T |
48708256 |
gagagaatattgtaatattttttaatataatgaaatattttttggagtttgtcacgtggtttttctcttagtattatagagtttttcatgttaaatattg |
48708157 |
T |
|
| Q |
200 |
gt |
201 |
Q |
| |
|
|| |
|
|
| T |
48708156 |
gt |
48708155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 185
Target Start/End: Complemental strand, 24726442 - 24726288
Alignment:
| Q |
26 |
ataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaat |
125 |
Q |
| |
|
|||||| |||| |||||| ||| |||||||||| ||||| |||| |||||||| ||| || ||||| ||||||||||||| | || ||||||||| |
|
|
| T |
24726442 |
ataataacatttgaataggagt-ggtctcacggaaaacaatatagtgtatctcgtgtcggta----agagaatggagagaatattattatgttctttaat |
24726348 |
T |
|
| Q |
126 |
atagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttc |
185 |
Q |
| |
|
||| ||||||||||||| ||||||||| ||||| ||||||| ||||||| ||||||| |
|
|
| T |
24726347 |
ataatggaatatttttcagagtttgtctcgtggcttttcccttgatattagatggttttc |
24726288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 12930750 - 12930947
Alignment:
| Q |
7 |
aacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaa |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12930750 |
aacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgaga--gagtggagagaa |
12930847 |
T |
|
| Q |
107 |
tattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930848 |
tattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca |
12930947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 12935496 - 12935693
Alignment:
| Q |
7 |
aacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaa |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12935496 |
aacttctaggtgctataaaataatagcattagagtaaaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgaga--gagtggagagaa |
12935593 |
T |
|
| Q |
107 |
tattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935594 |
tattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca |
12935693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 204
Target Start/End: Complemental strand, 26505063 - 26504945
Alignment:
| Q |
84 |
tgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttt |
183 |
Q |
| |
|
||||||| ||||||| || |||||||||||||||| |||| |||||| |||||||||| ||||||||| | ||||| ||| ||| ||||||| ||| | |
|
|
| T |
26505063 |
tgtgtgaaagagagttgaaagaatattgtaatattttttattatagttgaatattttttggagtttgtactgtggt-tttgccttgttattagacggtat |
26504965 |
T |
|
| Q |
184 |
tccacgttaaatattggtgtt |
204 |
Q |
| |
|
| |||||||||||||| |||| |
|
|
| T |
26504964 |
t-cacgttaaatattgatgtt |
26504945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 206
Target Start/End: Original strand, 15588948 - 15589060
Alignment:
| Q |
94 |
agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaa |
193 |
Q |
| |
|
|||||||||| ||| |||||||||| ||| ||| |||| ||||||||| ||||||||| | || | |||| |||| || ||||||||||| || ||| |
|
|
| T |
15588948 |
agagtggagaaaatgttgtaatattgtttgataaagtgaaatattttttagagtttgtcacttgatttttctctcattaatagagggtttttcaaaataa |
15589047 |
T |
|
| Q |
194 |
atattggtgttca |
206 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
15589048 |
atattgatgttca |
15589060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 34907213 - 34907410
Alignment:
| Q |
7 |
aacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaa |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34907213 |
aacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgaga--gagtggagagaa |
34907310 |
T |
|
| Q |
107 |
tattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907311 |
tattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca |
34907410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 8e-91; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 37040717 - 37040520
Alignment:
| Q |
7 |
aacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaa |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
37040717 |
aacttctaggtgctataaaataatagcattagaatagaagtaggtctcacggaaaacactatattgtatctcttgtgtgtgtgagagag--tggagaaaa |
37040620 |
T |
|
| Q |
107 |
tattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37040619 |
tattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca |
37040520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 26 - 206
Target Start/End: Original strand, 15290322 - 15290499
Alignment:
| Q |
26 |
ataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaat |
125 |
Q |
| |
|
||||||||||| |||||| ||| |||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||| |
|
|
| T |
15290322 |
ataatagcattcgaataggagtgggtctcacgg-aaacactatattgtatctcttgtgtgtgtaagag--agtggagagaatattgtaatattcttaaat |
15290418 |
T |
|
| Q |
126 |
atagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca |
206 |
Q |
| |
|
||||||||| || ||| ||||||||||||||||| | | |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15290419 |
atagtggaaaatcttttggagtttgtcccgtggtttatacctcggtattagagggttttccacgttaaatattggtgttca |
15290499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 12099073 - 12099263
Alignment:
| Q |
7 |
aacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaa |
106 |
Q |
| |
|
||||| |||||| ||||| |||||| |||| |||||| ||| ||||||| ||||||| ||||||| ||||||||| |||| |||| ||||||||||| |
|
|
| T |
12099073 |
aacttttaggtgttataaaataatatcatttgaataggagtgagtctcactagaaacacaatattgtgtctcttgtgcgtgtaagag--agtggagagaa |
12099170 |
T |
|
| Q |
107 |
tattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattg |
199 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||| |||| ||||| || ||||||||||||| ||||| |||||||| |
|
|
| T |
12099171 |
tattgtaatattctttaatatagttgaaattttttcggagtttgtcccttggtttttccttcgtcattagagggtttttcacgtaaaatattg |
12099263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 12082088 - 12082227
Alignment:
| Q |
7 |
aacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaa |
106 |
Q |
| |
|
|||||||||| ||||||| |||||| |||| |||||| || |||||| |||||||||||||||||||||| | |||| |||||||||||| || |
|
|
| T |
12082088 |
aacttctaggcgctataaaataataacatttgaataggagcgagtctcattagaaacactatattgtatctcttttccgtgt--aagagagtggagaaaa |
12082185 |
T |
|
| Q |
107 |
tattgtaatattctttaatatagtggaatatttttcggagttt |
149 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
12082186 |
tattgtaatattc-ttaatatagtggaatattttttggagttt |
12082227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 2757448 - 2757370
Alignment:
| Q |
60 |
aaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttt |
140 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||||||||||||||||| || |||||| || |||||||||||||||||| |
|
|
| T |
2757448 |
aaacactatattgtatctcttgagtgtg--aaagagagtggagagaatagtgcaatatttttaaatatagtggaatatttt |
2757370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 29107165 - 29106969
Alignment:
| Q |
7 |
aacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaa |
106 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
29107165 |
aacttctaggtgctaaaaaataatagcattagaatagaagtaggtctcacgggaaacactat-ttgtatctcttgtgtgtgtaagagag--tggagagaa |
29107069 |
T |
|
| Q |
107 |
tattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29107068 |
tattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca |
29106969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 42911280 - 42911084
Alignment:
| Q |
7 |
aacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaa |
106 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
42911280 |
aacttcttggtgctataaaataatagcattagaatagaagtaggtctcaagggaaacactatattgtatcttttgtgtgtgtgag--agagtggagagaa |
42911183 |
T |
|
| Q |
107 |
tattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca |
206 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42911182 |
tattgtaatattcttaaatatagtggaata-ttttcggagtttgtcccgtggtttttccctcggtattagagggttttccatgttaaatattggtgttca |
42911084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 205
Target Start/End: Complemental strand, 38997320 - 38997230
Alignment:
| Q |
115 |
tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttc |
205 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||||| || |||| || ||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
38997320 |
tattctttaatataatggattattttttggagtttgtcccgtagtttttcgttcgatattagagggttttcgacgtaaaatattgctgttc |
38997230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 8539257 - 8539456
Alignment:
| Q |
7 |
aacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactata---ttgtatctcttgtgtgtgtgagagagagtggaga |
103 |
Q |
| |
|
||||| |||||||| ||| ||||||||| | |||||| ||| |||||||||| |||||||||| ||||||||||||||||||| |||| |||||||| |
|
|
| T |
8539257 |
aacttttaggtgctgtaaaataatagcaatcgaataggagtgggtctcacgg-aaacactataatattgtatctcttgtgtgtgtaagag--agtggaga |
8539353 |
T |
|
| Q |
104 |
gaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgt |
203 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
8539354 |
taatattgtaatattcttaaatatagtggaatatctttcggagtttgtcccgtgatttttccctcggtattagagggttttccacgttaaatattgatgt |
8539453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 2100379 - 2100291
Alignment:
| Q |
115 |
tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| || |||| |||| ||||| |||||||||||| |||||||||| |||||| |
|
|
| T |
2100379 |
tattctttaatatagtggaatatttttcggagtttgcccc---gtttttcgctcattattaaagggttttccaccttaaatattgatgttca |
2100291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 2100771 - 2100723
Alignment:
| Q |
72 |
gtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattcttt |
122 |
Q |
| |
|
||||||||||||| ||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
2100771 |
gtatctcttgtgtatgtaagagag--tggagagaatattgtaatattcttt |
2100723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 51302235 - 51302306
Alignment:
| Q |
7 |
aacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
78 |
Q |
| |
|
|||||||||||||||||| | ||| ||||| |||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
51302235 |
aacttctaggtgctataaaacaattgcattcgaataggagtgggtctcacgggaaacactatattgtatctc |
51302306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 51302308 - 51302344
Alignment:
| Q |
170 |
gtattagagggttttccacgttaaatattggtgttca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51302308 |
gtattagagggttttccacgttaaatattggtgttca |
51302344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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