View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4365-Insertion-14 (Length: 201)

Name: NF4365-Insertion-14

Description: NF4365

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF4365-Insertion-14

[»] chr3 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 186; E-Value: 1e-101

Query Start/End: Original strand, 8 - 201

Target Start/End: Complemental strand, 24831434 - 24831241

Alignment:

Q	8	aaatgaaggcctgatcaactaccacttccaaatgagaggatcggagtaactaatggtggtaatcttcaacattttaacagattgagtgaaacagaaagga	107	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24831434	aaatgaaggcctgatcaactaccacttccaaatgagaggatcggagtaactaacggtggtaatcttcaacattttaacagattgagtgaaacagaaagga	24831335	T

Q	108	ataatttgcaacctatcttggcattggtggtacaattgcttgcttgcttctatggaactttatgttcatatcataaaagtgtagccacttatta	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24831334	ataatttgcaacctatcttggcattggtggtacaattgcttgcttgcttctatggaactttatgttcatatcataaaagcgtagccacttatta	24831241	T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 35; E-Value: 0.00000000007

Query Start/End: Original strand, 147 - 201

Target Start/End: Complemental strand, 16947478 - 16947424

Alignment:

Q	147	ttgcttgcttctatggaactttatgttcatatcataaaagtgtagccacttatta	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	16947478	ttgcttgcttctatagaactttatgttcatatcatgcaagcatagccacttatta	16947424	T

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