View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4365-Insertion-2 (Length: 1024)
Name: NF4365-Insertion-2
Description: NF4365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4365-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 488 - 876
Target Start/End: Original strand, 13888708 - 13889097
Alignment:
| Q |
488 |
tagctcatgttggcaaatgatgctttccgatgaggtccttcttcctactactcaaggaatgtaaattcaccacatgttgggtaaagttcacgttgcatga |
587 |
Q |
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| T |
13888708 |
tagctcatgttggcaaatgatgctttccgatgaggtccttcttcctactcctcaaggaatgtaaattcaccacatgttgggtaaagttcacgttgcatga |
13888807 |
T |
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| Q |
588 |
gcttatcggaagtagaagttttcccttcttcaaactatacaa-gtaagtagcaatgtccctctagtccctggtctcctttcaatattctcatcttaccgt |
686 |
Q |
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| T |
13888808 |
gcttatcggaagtagaagttttcccttcttcaaactatacaaagtaagtagcaatgtccctctagtccctggtctcctttcaacattctcatcttaccgt |
13888907 |
T |
|
| Q |
687 |
tatcgagtgtgcatttcaatgttaggtacatggttgataaagttggcatatagcattgagagagttggacgacctgcgatgatgttatatgatgaaaggg |
786 |
Q |
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| T |
13888908 |
tatcgagtgtgcatttcaatgttaggtacatggttgataaagttggcatatagcattgagagagttggaagacctgcgatgatgttatataatgaaaggg |
13889007 |
T |
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| Q |
787 |
gagcgtccaccaagctttggcatctgtctgttcctcatgagaagcccaccaagctttctgtagcacctaaattttaacaacgaacgtgca |
876 |
Q |
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| T |
13889008 |
gagcgtccaccaagctttggcatcagtctgttcctcatgagaagcccaccaagctttctgtagcacctaaattttaacaatgaacatgca |
13889097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 14 - 309
Target Start/End: Original strand, 13886941 - 13887236
Alignment:
| Q |
14 |
tatattctccatgtgtttgttgaatacctaagaatgactttttggttagtaccgtattttaagtaaggggtttatgaagcatatcaccaaatttaatact |
113 |
Q |
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| T |
13886941 |
tatattctccatgtgtttgttgaatacctaagaatgactttttggttagtaccgtattttaagtaaggggtttctgaagcatatcaccaaatttaatact |
13887040 |
T |
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| Q |
114 |
ctctca-gcctta-caaatgattatttgtcaacatgttgatgaattggtcatctcacacatcacatatagtcgatacgttcgaacaacaataaacatatt |
211 |
Q |
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| T |
13887041 |
ctctcaggcctcagctaatgattatttctcaacatgttgatgaattggtcatctcacacatcacatgtagtcgatacgttcgaacaacaataaacatatt |
13887140 |
T |
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| Q |
212 |
tttccataaatggaataaattnnnnnnntgttgattctctctccacaaacatatcttagttgaactatgtgatcataaaataaaatcattagacttaa |
309 |
Q |
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| T |
13887141 |
tttccataaatggattaaatt-aaaaactgtt-attctctctccacaattgtatcatagttcaactatgtgatcctaaaataaaatcattagacttaa |
13887236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 305 - 489
Target Start/End: Original strand, 13888494 - 13888678
Alignment:
| Q |
305 |
cttaattgtcgaataaaaacatttttctcctccgagtcttaaaggccattcattaagtgccactcatttcgcaaataggatcgtgcaaacaacaaaacaa |
404 |
Q |
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| T |
13888494 |
cttaattctcgaataaaaacatttttctcctccgagtcttaaaggccattcattaagtgccactcatttcgtaaataggatcgtgcaaacaacaaaacaa |
13888593 |
T |
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| Q |
405 |
gtggagagaaagatattagttcaatatgatatgagaagaaattcaaattttatattagagattttgatgtcatcactttgagcta |
489 |
Q |
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| T |
13888594 |
gtggagagaaagatagtagttcaatatgatatgagaagaaattcgaattttatattagagattttgatgtcatcactttgagcta |
13888678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 920 - 970
Target Start/End: Original strand, 13889123 - 13889173
Alignment:
| Q |
920 |
gcactaaaatatttacgatcatcttcaatttaaaatcaaagtaaatctttt |
970 |
Q |
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| T |
13889123 |
gcactaaaatatttacgatcatcttcaatttaaaatcaaagtaaatctttt |
13889173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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