View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4365-Insertion-3 (Length: 1006)

Name: NF4365-Insertion-3
Description: NF4365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4365-Insertion-3
NF4365-Insertion-3
[»] chr3 (1 HSPs)
chr3 (851-999)||(37602064-37602209)
[»] chr1 (1 HSPs)
chr1 (851-999)||(46558782-46558927)
[»] chr5 (2 HSPs)
chr5 (847-950)||(22778625-22778728)
chr5 (510-590)||(31217026-31217105)
[»] chr4 (4 HSPs)
chr4 (349-481)||(11013085-11013216)
chr4 (122-214)||(11013353-11013445)
chr4 (701-761)||(11012773-11012833)
chr4 (692-783)||(12189863-12189954)
[»] chr8 (1 HSPs)
chr8 (680-795)||(17931981-17932096)
[»] chr6 (1 HSPs)
chr6 (708-795)||(23602332-23602419)
[»] scaffold0838 (1 HSPs)
scaffold0838 (701-789)||(1818-1906)
[»] scaffold0832 (1 HSPs)
scaffold0832 (701-789)||(1849-1937)
[»] chr7 (1 HSPs)
chr7 (654-789)||(5760659-5760794)


Alignment Details
Target: chr3 (Bit Score: 90; Significance: 6e-43; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 851 - 999
Target Start/End: Original strand, 37602064 - 37602209
Alignment:
Q  851 ttattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaacccactactttaca 950  Q
    ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||     
T  37602064 ttattcaaatagatgtaaatgaataggcatcagctactaccatcaaaatatggctgcaagttctacacatgagtaatg-catcaaatccactactttacg 37602162  T
Q  951 atctaaatgtaacgtgtccaattggagctttttctacaaatctgcaaat 999  Q
     || ||||||||||||||  ||||||||||||  |||||||||||||||    
T  37602163 gtccaaatgtaacgtgtcatattggagctttt--tacaaatctgcaaat 37602209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 6e-43; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 851 - 999
Target Start/End: Complemental strand, 46558927 - 46558782
Alignment:
Q  851 ttattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaacccactactttaca 950  Q
    ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||     
T  46558927 ttattcaaatagatgtaaatgaataggcatcagctactaccatcaaaatatggctgcaagttctacacatgagtaatg-catcaaatccactactttacg 46558829  T
Q  951 atctaaatgtaacgtgtccaattggagctttttctacaaatctgcaaat 999  Q
     || ||||||||||||||  ||||||||||||  |||||||||||||||    
T  46558828 gtccaaatgtaacgtgtcatattggagctttt--tacaaatctgcaaat 46558782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 847 - 950
Target Start/End: Original strand, 22778625 - 22778728
Alignment:
Q  847 cacattattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaa-cccactact 945  Q
    ||||||||| |||||||||||||||| ||||||||| |||||  ||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||||    
T  22778625 cacattattcaaatagatgtaaatgaataggcatcaactacttacatcaaaatatggctgcaagttctacacgtgaataatg-catcaaaccccactact 22778723  T
Q  946 ttaca 950  Q
    |||||    
T  22778724 ttaca 22778728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 510 - 590
Target Start/End: Original strand, 31217026 - 31217105
Alignment:
Q  510 tcttcttcttattcagatactgaagtctcttggtcataaatgccatttctgcaacatcagaaccatcttcagaatctccat 590  Q
    ||||||||||  |||| ||||||| ||| ||||||||||||||||| ||| | ||||| |||||||||||| |||||||||    
T  31217026 tcttcttcttgatcaggtactgaaatcttttggtcataaatgccatctcttc-acatctgaaccatcttcataatctccat 31217105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 349 - 481
Target Start/End: Complemental strand, 11013216 - 11013085
Alignment:
Q  349 taaggcttttcttaactcttttattgaagttctctttcttggagctttccttcttatgcttgtccttctgaagatcaatacaatcaacaacaaaagtgac 448  Q
    |||| |||||||| ||| | || ||||||||||| |||||||| |||||||||| |  |||||||||||||||||||  | ||||  |||| || |||||    
T  11013216 taagacttttctttactatgttcttgaagttctccttcttggaactttccttctcagacttgtccttctgaagatcaggataatcgccaac-aacgtgac 11013118  T
Q  449 caagtttcttgcaattgaagcaaacctttggtt 481  Q
    ||||||||||||| |||||||||  ||||||||    
T  11013117 caagtttcttgcagttgaagcaagtctttggtt 11013085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 11013445 - 11013353
Alignment:
Q  122 agtaattcatagttctttttcaagattttaaaactttttgatttactgtgataactgctaatgaggtatttaacaacagtaactaacttttca 214  Q
    ||||||||||| | ||||||||| || ||||||| |||| ||||||| |||||| | |||||||||| |||||||||||| | ||||| ||||    
T  11013445 agtaattcatattgctttttcaatatcttaaaacgtttttatttactctgataatttctaatgaggtctttaacaacagtgattaactcttca 11013353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 701 - 761
Target Start/End: Complemental strand, 11012833 - 11012773
Alignment:
Q  701 atctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttg 761  Q
    ||||||||||||| |||||||||||||||| ||||||  | |||||||||||| |||||||    
T  11012833 atctcatgactctctagagagcttatcagagtctccaatccaagcttgttcaattcttttg 11012773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 692 - 783
Target Start/End: Original strand, 12189863 - 12189954
Alignment:
Q  692 ataagctttatctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaacctt 783  Q
    ||||||| |||| ||||| | || ||||| ||||||||||||| || ||| ||||||||||| || |||| ||||| ||| |||||||||||    
T  12189863 ataagctatatcacatgaattttgagagaacttatcagattcttcaggcttagcttgttcaaatcctttgcttcctgaatggttgtaacctt 12189954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 680 - 795
Target Start/End: Complemental strand, 17932096 - 17931981
Alignment:
Q  680 ggttcatcacctataagctttatctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaa 779  Q
    ||||||| | |||| ||||  ||||| |||||||| |||||| |||||||||||| || |||||| ||||||||||| |||| ||| | ||| |||||||    
T  17932096 ggttcataaactattagctccatctcttgactcttcagagaggttatcagattcttcaggctaagattgttcaagtcctttgcttcgtgaatggttgtaa 17931997  T
Q  780 ccttaggtctccactt 795  Q
    ||||||| ||||||||    
T  17931996 ccttaggcctccactt 17931981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 708 - 795
Target Start/End: Complemental strand, 23602419 - 23602332
Alignment:
Q  708 gactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaaccttaggtctccactt 795  Q
    ||||||| |||||||||||||| ||||||| ||||||  |||| |||| ||||| |||||| |||| ||||||||| || ||||||||    
T  23602419 gactcttcagagagcttatcaggttctccaagctaagtctgtttaagtattttgcttcctatatagatgtaacctttgggctccactt 23602332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0838 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0838
Description:

Target: scaffold0838; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 701 - 789
Target Start/End: Original strand, 1818 - 1906
Alignment:
Q  701 atctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaaccttaggtct 789  Q
    |||||||| || || ||||| ||||||||||| |||| ||| |||||||||| ||| |||| ||||| ||| ||||||||||| |||||    
T  1818 atctcatgtcttttgagagaacttatcagattttccaagcttagcttgttcatgtcctttgcttcctgaatggttgtaacctttggtct 1906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0832 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0832
Description:

Target: scaffold0832; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 701 - 789
Target Start/End: Original strand, 1849 - 1937
Alignment:
Q  701 atctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaaccttaggtct 789  Q
    |||||||| || || ||||| ||||||||||| |||| ||| |||||||||| ||| |||| ||||| ||| ||||||||||| |||||    
T  1849 atctcatgtcttttgagagaacttatcagattttccaagcttagcttgttcatgtcctttgcttcctgaatggttgtaacctttggtct 1937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 654 - 789
Target Start/End: Original strand, 5760659 - 5760794
Alignment:
Q  654 gagcaatagacttagatttcttcattggttcatcacctataagctttatctcatgactctttagagagcttatcagattctccatgctaagcttgttcaa 753  Q
    |||||||||||||| ||| |||   ||||||||| ||   |||||  |||||||||||||| |||||||| || ||| | |||| ||| | ||| |||||    
T  5760659 gagcaatagacttatattgcttagctggttcatctccatcaagctcaatctcatgactcttgagagagctaatgagactttccaagcttaccttattcaa 5760758  T
Q  754 gtcttttgtttcctaaatagttgtaaccttaggtct 789  Q
     || |||| ||||| |||||||||| |||| |||||    
T  5760759 ttcctttgcttcctgaatagttgtagcctttggtct 5760794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University