View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4365-Insertion-4 (Length: 986)

Name: NF4365-Insertion-4
Description: NF4365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4365-Insertion-4
NF4365-Insertion-4
[»] chr1 (2 HSPs)
chr1 (280-986)||(46553464-46554171)
chr1 (8-212)||(46553193-46553397)
[»] chr7 (9 HSPs)
chr7 (280-986)||(1029874-1030581)
chr7 (323-885)||(40832508-40833072)
chr7 (8-212)||(1029613-1029809)
chr7 (8-62)||(40832132-40832186)
chr7 (108-146)||(10282836-10282874)
chr7 (108-146)||(12216867-12216905)
chr7 (108-146)||(12244678-12244716)
chr7 (108-146)||(16174949-16174987)
chr7 (108-146)||(37986152-37986190)
[»] chr8 (6 HSPs)
chr8 (108-146)||(18969459-18969497)
chr8 (108-158)||(7848657-7848708)
chr8 (108-142)||(1679068-1679102)
chr8 (109-143)||(14960301-14960335)
chr8 (108-146)||(18947042-18947080)
chr8 (108-146)||(38565557-38565595)
[»] chr3 (3 HSPs)
chr3 (108-146)||(14352240-14352278)
chr3 (108-146)||(14900489-14900527)
chr3 (108-146)||(25250456-25250494)
[»] chr5 (2 HSPs)
chr5 (110-146)||(644444-644480)
chr5 (117-146)||(27155296-27155325)
[»] chr2 (3 HSPs)
chr2 (108-171)||(7618689-7618752)
chr2 (112-146)||(559415-559449)
chr2 (108-146)||(15458844-15458882)
[»] scaffold0199 (1 HSPs)
scaffold0199 (108-142)||(4305-4339)
[»] chr4 (4 HSPs)
chr4 (108-146)||(10117972-10118010)
chr4 (108-146)||(30337848-30337886)
chr4 (108-142)||(37813205-37813239)
chr4 (108-146)||(39476315-39476353)
[»] chr6 (1 HSPs)
chr6 (108-145)||(6434262-6434299)


Alignment Details
Target: chr1 (Bit Score: 668; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 280 - 986
Target Start/End: Original strand, 46553464 - 46554171
Alignment:
Q  280 tgttatttgtttaaggaaaactgcaacagacagatcatttgttaagtaacttgtttgtgtcttgttttacacagctgtcggtattcctgcttggttccaa 379  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46553464 tgttatttgtttaaggaaaactgtaacagacagatcctttgttaagtaacttgtttgtgtcttgttttacacagctgtcggtattcctgcttggttccaa 46553563  T
Q  380 aaaggctcccttcctacagcatcaccatcacttcccctcatacttgttggaccgggcacaggatgtgcaccttttcgtggatttatcgaggaaagggcat 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46553564 aaaggctcccttcctacagcatcaccatcacttcccctcatacttgttggaccgggcacaggatgtgcaccttttcgcggatttatcgaggaaagggcat 46553663  T
Q  480 tgcaaagtaaaactatttccactgctccaattatgttcttctttggctgttggaatgaagacggtgactttttatacaaagacttgtggttgaatcattc 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46553664 tgcaaagtaaaactatttccactgctccaattatgttcttctttggctgttggaatgaagacggtgactttttatacaaagacttgtggttgaatcattc 46553763  T
Q  580 acagaacaatggtgtcctttcagaagcaaatggtggaggtttctatgttgctttctctcgagaccagcctgagaaagtttatgttcagcataagatgaag 679  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46553764 acagaacaatggtgtactttcagaagcaaatggtggaggtttctatgttgctttctctcgagaccagcctgagaaagtttatgttcagcataagatgaag 46553863  T
Q  680 gaacacagtggaagggtttggaacctattagccgatggagctgctgtttatatagcaggttcatcaaccaaaatgcctacggatgtaacatcagcttttg 779  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46553864 gaacacagtggaagggtttggaacctattagccgatggagctgctgtttatatagcaggttcatcaaccaaaatgcctacggatgtaacatcagcttttg 46553963  T
Q  780 aggaaattgtatctaaagaaaatgaggtttcaaaggaagatgcagttaggtggatcagggcattagaaaggtgcggtaaatatcacattgaagcatggtc 879  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46553964 aggaaattgtatctaaagaaaatgaggtttcaaaggaagatgcagttaggtggattagggcattagaaaggtgcggtaaatatcacattgaagcatggtc 46554063  T
Q  880 ttgagagttttattttgggtcagatagcaagtttgggtcctctatag-ctgtttacggtgcaactgtctgcagacggttgtagagggtccgggttcgtca 978  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  46554064 ttgagagttttattttgggtcagatagcaagtttgggtcctctatagccattttacggagcaactgtctgcagacggttgtagagggtccgggttcgtca 46554163  T
Q  979 aggaggtc 986  Q
    ||||||||    
T  46554164 aggaggtc 46554171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 46553193 - 46553397
Alignment:
Q  8 ctagccacattagatccccgcaatggtatgcacaaacaattagccatttattgcatttgttttaggttctgttattacgttattacatattctnnnnnnn 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  46553193 ctagccacattagatccccgcaatggtatgcacaaacaattagccatttattgcatttgttttaggttctgttattacgttattacatattctaaaaaaa 46553292  T
Q  108 tgattttgatattcaataatttagagattattttttagaaaagcagaagttcttctgtgtttgtcaaccgtaataagtatcacttttataaacaatatca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46553293 tgattttgatattcaataatttagagattattttttagaaaagcagaagttcttctgtgtttgtcaaccgtaataagtatcacttttataaacaatatca 46553392  T
Q  208 tctat 212  Q
    |||||    
T  46553393 tctat 46553397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 656; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 280 - 986
Target Start/End: Original strand, 1029874 - 1030581
Alignment:
Q  280 tgttatttgtttaaggaaaactgcaacagacagatcatttgttaagtaacttgtttgtgtcttgttttacacagctgtcggtattcctgcttggttccaa 379  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  1029874 tgttatttgtttaaggaaaactgtaacagacagatcatttgttaggtaacttgtttgtgtcttgtttttcacagctgtcggtattcctgcttggttccat 1029973  T
Q  380 aaaggctcccttcctacagcatcaccatcacttcccctcatacttgttggaccgggcacaggatgtgcaccttttcgtggatttatcgaggaaagggcat 479  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1029974 aaaggctcccttcctacaccatcaccatcacttcccctcatacttgttggaccgggcacaggatgtgcaccttttcgcggatttatcgaggaaagggcat 1030073  T
Q  480 tgcaaagtaaaactatttccactgctccaattatgttcttctttggctgttggaatgaagacggtgactttttatacaaagacttgtggttgaatcattc 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1030074 tgcaaagtaaaactatttccactgctccaattatgttcttctttggctgttggaatgaagacggtgactttttatacaaagacttgtggttgaatcattc 1030173  T
Q  580 acagaacaatggtgtcctttcagaagcaaatggtggaggtttctatgttgctttctctcgagaccagcctgagaaagtttatgttcagcataagatgaag 679  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1030174 acagaacaatggtgtactttcagaagcaaatggtggaggtttctatgttgctttctctcgagaccagcctgagaaagtttatgttcagcataagatgaag 1030273  T
Q  680 gaacacagtggaagggtttggaacctattagccgatggagctgctgtttatatagcaggttcatcaaccaaaatgcctacggatgtaacatcagcttttg 779  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1030274 gaacacagtggaagggtttggaacctattagccgatggagctgctgtttatatagcaggttcatcaaccaaaatgcctacggatgtaacatcagcttttg 1030373  T
Q  780 aggaaattgtatctaaagaaaatgaggtttcaaaggaagatgcagttaggtggatcagggcattagaaaggtgcggtaaatatcacattgaagcatggtc 879  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1030374 aggaaattgtatctaaagaaaatgaggtttcaaaggaagatgcagttaggtggattagggcattagaaaggtgcggtaaatatcacattgaagcatggtc 1030473  T
Q  880 ttgagagttttattttgggtcagatagcaagtttgggtcctctatag-ctgtttacggtgcaactgtctgcagacggttgtagagggtccgggttcgtca 978  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1030474 ttgagagttttattttgggtcagatagcaagtttgggtcctctatagccattttacggggcaactgtctgcagacggttgtagagggtccgggttcgtca 1030573  T
Q  979 aggaggtc 986  Q
    ||||||||    
T  1030574 aggaggtc 1030581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 323 - 885
Target Start/End: Original strand, 40832508 - 40833072
Alignment:
Q  323 aagtaacttgtttgtgtct--tgttttacacagctgtcggtattcctgcttggttccaaaaaggctcccttcctacagcatcaccatcacttcccctcat 420  Q
    ||||||||| |||||||||  ||||||||||||| ||| |  |||| |  ||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  40832508 aagtaacttatttgtgtctcttgttttacacagccgtcagccttcccgtctggttccaaaaaggctcccttcctacaccatcaccttcacttcccctcat 40832607  T
Q  421 acttgttggaccgggcacaggatgtgcaccttttcgtggatttatcgaggaaagggcattgcaaagtaaaactatttccactgctccaattatgttcttc 520  Q
    ||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  40832608 acttgttggaccgggaacaggatgtgcaccttttcgcggatttatagaggaaagggcattgcaaagtaaaactatttccattgctccaattatattcttc 40832707  T
Q  521 tttggctgttggaatgaagacggtgactttttatacaaagacttgtggttgaatcattcacagaacaatggtgtcctttcagaagcaaatggtggaggtt 620  Q
    |||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||  ||||||||||    
T  40832708 tttggctgttggaatgaagatggagactttttatacaaagacttctggttgaatcattcacagaacaatggtgtgctttcagaatcaacaggtggaggtt 40832807  T
Q  621 tctatgttgctttctctcgagaccagcctgagaaagtttatgttcagcataagatgaaggaacacagtggaagggtttggaacctattagccgatggagc 720  Q
    ||||||||||||||||| |||||||||| || || |||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| || |||||    
T  40832808 tctatgttgctttctctagagaccagccagaaaaggtttatgttcagcataagttgagggaacacagtggaagggtttggaacttattagctgagggagc 40832907  T
Q  721 tgctgtttatatagcaggttcatcaaccaaaatgcctacggatgtaacatcagcttttgaggaaattgtatctaaagaaaatgaggtttcaaaggaagat 820  Q
    | ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  40832908 ttctgtttatatagcaggttcattaaccaaaatgcctacagatgtaacatcagcttttgaggaaattgtatctaaagaaaatgatgtttcaaaagaagat 40833007  T
Q  821 gcagttaggtggatcagggcattagaaaggtgcggtaaatatcacattgaagcatggtcttgaga 885  Q
    |||||||| ||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  40833008 gcagttagatggattagggcattagaaaagtgtggtaaatatcacattgaagcatggtcttgaga 40833072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 1029613 - 1029809
Alignment:
Q  8 ctagccacattagatccccgcaatggtatgcacaaacaattagccatttattgcatttgttttaggttctgttattacgttattacatattctnnnnnnn 107  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||        |||||||           
T  1029613 ctagccacattagatccctgcaatggtatgcacaaacaattagccatttattgcatttgttctaggttctgttattac--------atattctaaaaaaa 1029704  T
Q  108 tgattttgatattcaataatttagagattattttttagaaaagcagaagttcttctgtgtttgtcaaccgtaataagtatcacttttataaacaatatca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  1029705 tgattttgatattcaataatttagagattattttttagaaaagcagaagttattatgtgtttgtcaaccgtaataagtatcacttttataaacaatatca 1029804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 40832132 - 40832186
Alignment:
Q  8 ctagccacattagatccccgcaatggtatgcacaaacaattagccatttattgca 62  Q
    |||||| |||||||||||||| |||||||||||||| |||||| || ||||||||    
T  40832132 ctagccgcattagatccccgcgatggtatgcacaaaaaattaggcacttattgca 40832186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 10282874 - 10282836
Alignment:
Q  108 tgattttgatattcaataatttagagattattttttaga 146  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  10282874 tgattttgacattgaataatttagagattattttttaga 10282836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 12216867 - 12216905
Alignment:
Q  108 tgattttgatattcaataatttagagattattttttaga 146  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  12216867 tgattttgatattgaataatttagagattatgttttaga 12216905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 12244678 - 12244716
Alignment:
Q  108 tgattttgatattcaataatttagagattattttttaga 146  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  12244678 tgattttgatattcaataatttagtgattattatttaga 12244716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 16174949 - 16174987
Alignment:
Q  108 tgattttgatattcaataatttagagattattttttaga 146  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  16174949 tgattttgacatttaataatttagagattattttttaga 16174987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 37986190 - 37986152
Alignment:
Q  108 tgattttgatattcaataatttagagattattttttaga 146  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  37986190 tgattttgacattgaataatttagagattattttttaga 37986152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 18969459 - 18969497
Alignment:
Q  108 tgattttgatattcaataatttagagattattttttaga 146  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  18969459 tgattttgacattcaataatttagagattattttttaga 18969497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 7848657 - 7848708
Alignment:
Q  108 tgattttgatattcaataatttagagattatttttta-gaaaagcagaagtt 158  Q
    ||||||||||  |||||||||||||||||| |||||| ||||||||||||||    
T  7848657 tgattttgattctcaataatttagagattaatttttaggaaaagcagaagtt 7848708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 142
Target Start/End: Original strand, 1679068 - 1679102
Alignment:
Q  108 tgattttgatattcaataatttagagattattttt 142  Q
    ||||||||||| |||||||||||||||||||||||    
T  1679068 tgattttgatagtcaataatttagagattattttt 1679102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 14960301 - 14960335
Alignment:
Q  109 gattttgatattcaataatttagagattatttttt 143  Q
    ||||| |||||||||||||||||||||||||||||    
T  14960301 gatttcgatattcaataatttagagattatttttt 14960335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 18947080 - 18947042
Alignment:
Q  108 tgattttgatattcaataatttagagattattttttaga 146  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  18947080 tgattttgacattcaataatttagaggttattttttaga 18947042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 38565557 - 38565595
Alignment:
Q  108 tgattttgatattcaataatttagagattattttttaga 146  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  38565557 tgattttgatactcaataatttagagattaatttttaga 38565595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 14352278 - 14352240
Alignment:
Q  108 tgattttgatattcaataatttagagattattttttaga 146  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  14352278 tgattttgatattcaataatttaaagattattttttaga 14352240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 14900527 - 14900489
Alignment:
Q  108 tgattttgatattcaataatttagagattattttttaga 146  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  14900527 tgattttgacattctataatttagagattattttttaga 14900489  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 25250494 - 25250456
Alignment:
Q  108 tgattttgatattcaataatttagagattattttttaga 146  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  25250494 tgattttgatataaaataatttagagattattttttaga 25250456  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 644480 - 644444
Alignment:
Q  110 attttgatattcaataatttagagattattttttaga 146  Q
    ||||||||||||||||||||||| |||||||||||||    
T  644480 attttgatattcaataatttagatattattttttaga 644444  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 27155325 - 27155296
Alignment:
Q  117 tattcaataatttagagattattttttaga 146  Q
    ||||||||||||||||||||||||||||||    
T  27155325 tattcaataatttagagattattttttaga 27155296  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 7618752 - 7618689
Alignment:
Q  108 tgattttgatattcaataatttagagattattttttagaaaagcagaagttcttctgtgtttgt 171  Q
    ||||||||||||||||||||||||||||| |||   | |||| |||||||| || |||||||||    
T  7618752 tgattttgatattcaataatttagagattttttaaaaaaaaaacagaagttattttgtgtttgt 7618689  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 559415 - 559449
Alignment:
Q  112 tttgatattcaataatttagagattattttttaga 146  Q
    ||||| |||||||||||||||||||||||||||||    
T  559415 tttgacattcaataatttagagattattttttaga 559449  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 15458844 - 15458882
Alignment:
Q  108 tgattttgatattcaataatttagagattattttttaga 146  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  15458844 tgattttgacattaaataatttagagattattttttaga 15458882  T

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Target: scaffold0199 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 142
Target Start/End: Original strand, 4305 - 4339
Alignment:
Q  108 tgattttgatattcaataatttagagattattttt 142  Q
    ||||||||||| |||||||||||||||||||||||    
T  4305 tgattttgatagtcaataatttagagattattttt 4339  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 10117972 - 10118010
Alignment:
Q  108 tgattttgatattcaataatttagagattattttttaga 146  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  10117972 tgattttgacattcaataattcagagattattttttaga 10118010  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 30337886 - 30337848
Alignment:
Q  108 tgattttgatattcaataatttagagattattttttaga 146  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  30337886 tgattttgatattcaataatttagagattaatttgtaga 30337848  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 142
Target Start/End: Complemental strand, 37813239 - 37813205
Alignment:
Q  108 tgattttgatattcaataatttagagattattttt 142  Q
    ||||||||| |||||||||||||||||||||||||    
T  37813239 tgattttgacattcaataatttagagattattttt 37813205  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 39476315 - 39476353
Alignment:
Q  108 tgattttgatattcaataatttagagattattttttaga 146  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  39476315 tgattttgacattgaataatttagagattattttttaga 39476353  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 6434299 - 6434262
Alignment:
Q  108 tgattttgatattcaataatttagagattattttttag 145  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  6434299 tgattttgatattcaataatttatagattatgttttag 6434262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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