View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4365-Insertion-7 (Length: 613)

Name: NF4365-Insertion-7
Description: NF4365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4365-Insertion-7
NF4365-Insertion-7
[»] chr1 (7 HSPs)
chr1 (8-580)||(49961428-49962000)
chr1 (480-583)||(4124701-4124804)
chr1 (477-528)||(4125416-4125467)
chr1 (479-528)||(51977197-51977246)
chr1 (479-540)||(51129373-51129434)
chr1 (479-525)||(3788435-3788481)
chr1 (479-528)||(49959954-49960003)
[»] chr5 (5 HSPs)
chr5 (479-583)||(1282911-1283015)
chr5 (478-528)||(1282253-1282303)
chr5 (478-540)||(41784621-41784683)
chr5 (479-511)||(42310849-42310881)
chr5 (479-570)||(39949492-39949583)
[»] chr8 (7 HSPs)
chr8 (477-542)||(788024-788089)
chr8 (479-548)||(5875160-5875229)
chr8 (477-532)||(34365259-34365314)
chr8 (479-528)||(1488485-1488534)
chr8 (479-548)||(35885336-35885405)
chr8 (479-532)||(39656909-39656962)
chr8 (477-548)||(5873162-5873234)
[»] chr4 (9 HSPs)
chr4 (479-542)||(5825334-5825397)
chr4 (478-548)||(24471829-24471899)
chr4 (479-528)||(35428158-35428207)
chr4 (421-478)||(37404642-37404699)
chr4 (478-570)||(17979071-17979163)
chr4 (479-547)||(38320420-38320488)
chr4 (483-548)||(38321281-38321346)
chr4 (479-511)||(24472623-24472655)
chr4 (515-587)||(34372219-34372291)
[»] chr6 (3 HSPs)
chr6 (479-547)||(3802790-3802858)
chr6 (479-540)||(1528561-1528622)
chr6 (479-528)||(3802064-3802113)
[»] chr3 (3 HSPs)
chr3 (476-540)||(1128213-1128277)
chr3 (479-525)||(50306525-50306571)
chr3 (478-527)||(23379331-23379380)
[»] chr2 (7 HSPs)
chr2 (478-542)||(5504343-5504407)
chr2 (479-547)||(5505200-5505268)
chr2 (411-470)||(11977346-11977405)
chr2 (477-511)||(42946485-42946519)
chr2 (478-570)||(2992812-2992904)
chr2 (479-525)||(26021913-26021959)
chr2 (479-511)||(41677041-41677073)
[»] chr7 (7 HSPs)
chr7 (479-540)||(41712965-41713026)
chr7 (477-532)||(3820392-3820447)
chr7 (477-528)||(9379794-9379845)
chr7 (479-570)||(34367362-34367452)
chr7 (479-528)||(9378729-9378778)
chr7 (501-570)||(34997698-34997767)
chr7 (479-519)||(48381305-48381345)


Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 8 - 580
Target Start/End: Complemental strand, 49962000 - 49961428
Alignment:
Q  8 tcaagatcgtttgttttcacaaggagcacattaaagacaattgattagataaaattatggtatgaggttttacaacgccaaaatcttcatctctcaattt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  49962000 tcaagatcgtttgttttcacaaggagcacattaaagacaattgattagataaaattatggtatgaggttttacaacgccaaaatcttcagctctcaattt 49961901  T
Q  108 taactttgatcaaaattcgtacaaaagacatatgtgaatttcaaatccttacatagggaattagggttgtgaaccaaccaaacnnnnnnnttatgaatat 207  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  49961900 tgactttgatcaaaattcgtacaaaagacatatgtgaatttcaaatccttacatagggaattagggttgtgaaccaaccaaacaaaaaaattatgaatat 49961801  T
Q  208 attattatgaaagtgttaatttaaacaagcctcaaagagtcaaagtgttgttattatttcttttaaaagctaagatctttgtatttct-aggtaaaattg 306  Q
    | | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  49961800 a-tgttatgaaagtgttaatttaagcaagcctcaaagagtcaaagtgttgttattatttcttttaaaagctaagatctttgtatttctgaggtaaaattg 49961702  T
Q  307 tttatcctctcttgttcagggttactctttgttgaaagaaacaattatttaaacttctattttagtccaatagttactgtgtaaatcctcaaaggtttga 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49961701 tttatcctctcttgttcagggttactctttgttgaaagaaacaattatttaaacttctattttagtccaatagttactgtgtaaatcctcaaaggtttga 49961602  T
Q  407 acaaac-taacacattgtttggttccacgttgaatttaataatttcgcgtcccaatgccaatttgaaggtgatggtggcatttagggtgggaatgggaaa 505  Q
    |||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||    
T  49961601 acaaacttaacacattgtttggttccacgttgaatttactgatttcgcgtcccaatgccaatttgaacgtgat-gtggcatttagggtgggaatggaaaa 49961503  T
Q  506 gagtttttcactataggaaagttttttctgaccattaaattaacgggaagtattgattttatcatagactctcta 580  Q
    |||||||  ||||| | ||||||||||||||| |||| ||||||| | |||||||||||||||||||||||||||    
T  49961502 gagttttctactatggaaaagttttttctgacaattagattaacgaggagtattgattttatcatagactctcta 49961428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 480 - 583
Target Start/End: Original strand, 4124701 - 4124804
Alignment:
Q  480 gtggcatttagggtgggaatgggaaagagtttttcactataggaaagttttttctgaccattaaattaacgggaagtattgattttatcatagactctct 579  Q
    ||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||| ||||| | | |||||||||||||||||||||| |||    
T  4124701 gtggcatttagggtgggaatgggaaagagtttcccactatgggaaagttttttctgaccattagattaatgaggagtattgattttatcatagactgtct 4124800  T
Q  580 atac 583  Q
    ||||    
T  4124801 atac 4124804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 477 - 528
Target Start/End: Complemental strand, 4125467 - 4125416
Alignment:
Q  477 atggtggcatttagggtgggaatgggaaagagtttttcactataggaaagtt 528  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  4125467 atggtggcatttagggtgggaatgggaaagagtttcccactataggaaagtt 4125416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 479 - 528
Target Start/End: Complemental strand, 51977246 - 51977197
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagtttttcactataggaaagtt 528  Q
    ||||||||||||||||| |||||||||||||||| |||||| ||||||||    
T  51977246 ggtggcatttagggtggaaatgggaaagagttttccactatgggaaagtt 51977197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 540
Target Start/End: Original strand, 51129373 - 51129434
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagtttttcactataggaaagttttttctgaccat 540  Q
    ||||||||||||||||||   ||||||||||||  |||||| |||||||||||||| |||||    
T  51129373 ggtggcatttagggtgggtgagggaaagagtttcccactatgggaaagttttttcttaccat 51129434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 525
Target Start/End: Original strand, 3788435 - 3788481
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagtttttcactataggaaa 525  Q
    |||||||||||||||||||| ||||||||||||  ||| ||||||||    
T  3788435 ggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 3788481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 528
Target Start/End: Original strand, 49959954 - 49960003
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagtttttcactataggaaagtt 528  Q
    ||||||||||||||||| |||| ||||||||||   ||||||||||||||    
T  49959954 ggtggcatttagggtggaaatgagaaagagtttcctactataggaaagtt 49960003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 479 - 583
Target Start/End: Complemental strand, 1283015 - 1282911
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagtttttcactataggaaagttttttctgaccattaaattaacgggaagtattgattttatcatagactctc 578  Q
    |||| ||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||| ||||| | | |||||||||||||||||||||| ||    
T  1283015 ggtgacatttagggtgggaatgggaaagagtttcccactatgggaaagttttttctgaccattagattaatgaggagtattgattttatcatagactgtc 1282916  T
Q  579 tatac 583  Q
    |||||    
T  1282915 tatac 1282911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 478 - 528
Target Start/End: Original strand, 1282253 - 1282303
Alignment:
Q  478 tggtggcatttagggtgggaatgggaaagagtttttcactataggaaagtt 528  Q
    ||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  1282253 tggtggcatttagggtgggaatgggaaagagtttcccactatgggaaagtt 1282303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 478 - 540
Target Start/End: Original strand, 41784621 - 41784683
Alignment:
Q  478 tggtggcatttagggtgggaatgggaaagagtttttcactataggaaagttttttctgaccat 540  Q
    |||||||||||||||||||   |||||||||||||  ||||| |||||||||||||| |||||    
T  41784621 tggtggcatttagggtgggtgagggaaagagttttctactatgggaaagttttttcttaccat 41784683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 511
Target Start/End: Original strand, 42310849 - 42310881
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagttt 511  Q
    |||||||||||||||||||||||||||||||||    
T  42310849 ggtggcatttagggtgggaatgggaaagagttt 42310881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 570
Target Start/End: Original strand, 39949492 - 39949583
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagtttttcactataggaaagttttttctgaccattaaattaacgggaagtattgattttatcat 570  Q
    ||||||||||||||||||   ||||||||||||| |||||| | ||||||||||   ||||||| ||||  | | |||| ||||||||||||    
T  39949492 ggtggcatttagggtgggtgagggaaagagttttccactatggaaaagtttttttataccattagattagagaggagtactgattttatcat 39949583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 477 - 542
Target Start/End: Original strand, 788024 - 788089
Alignment:
Q  477 atggtggcatttagggtgggaatgggaaagagtttttcactataggaaagttttttctgaccatta 542  Q
    ||||||||||||||||||||||||||||| |||||  ||| |||| ||||||||||||||||||||    
T  788024 atggtggcatttagggtgggaatgggaaaaagtttcccaccatagcaaagttttttctgaccatta 788089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 479 - 548
Target Start/End: Complemental strand, 5875229 - 5875160
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagtttttcactataggaaagttttttctgaccattaaattaa 548  Q
    |||||||||||||||||||||||| ||||||||| |||||| |||||||| ||  |||||||||||||||    
T  5875229 ggtggcatttagggtgggaatggggaagagttttccactatgggaaagttgttcttgaccattaaattaa 5875160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 477 - 532
Target Start/End: Complemental strand, 34365314 - 34365259
Alignment:
Q  477 atggtggcatttagggtgggaatgggaaagagtttttcactataggaaagtttttt 532  Q
    ||||||||||||||||| || | |||||||||||||||| ||||||||||||||||    
T  34365314 atggtggcatttagggtaggtaggggaaagagtttttcattataggaaagtttttt 34365259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 528
Target Start/End: Complemental strand, 1488534 - 1488485
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagtttttcactataggaaagtt 528  Q
    ||||||||||||| |||||| ||||||||||||| ||| |||||||||||    
T  1488534 ggtggcatttaggatgggaaggggaaagagttttccaccataggaaagtt 1488485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 548
Target Start/End: Original strand, 35885336 - 35885405
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagtttttcactataggaaagttttttctgaccattaaattaa 548  Q
    ||||||||||||||||||||||| |||||||||  ||| |||| ||||| |||  ||||||||| |||||    
T  35885336 ggtggcatttagggtgggaatggaaaagagtttcccaccatagaaaagtctttattgaccattagattaa 35885405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 532
Target Start/End: Complemental strand, 39656962 - 39656909
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagtttttcactataggaaagtttttt 532  Q
    |||||||||||||||||| | ||||||||||||   ||||||||||||||||||    
T  39656962 ggtggcatttagggtgggtaggggaaagagtttcctactataggaaagtttttt 39656909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 477 - 548
Target Start/End: Original strand, 5873162 - 5873234
Alignment:
Q  477 atggtggcattt-agggtgggaatgggaaagagtttttcactataggaaagttttttctgaccattaaattaa 548  Q
    |||||||||||| |||||||||||| ||||||||||   ||||| ||||||| |||  ||||||||| |||||    
T  5873162 atggtggcattttagggtgggaatgagaaagagtttccaactatgggaaagtatttcttgaccattagattaa 5873234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 479 - 542
Target Start/End: Original strand, 5825334 - 5825397
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagtttttcactataggaaagttttttctgaccatta 542  Q
    |||||||||||||||||||||||||||||||||  ||| |||| |||||||||||| |||||||    
T  5825334 ggtggcatttagggtgggaatgggaaagagtttcccaccatagcaaagttttttctaaccatta 5825397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 478 - 548
Target Start/End: Original strand, 24471829 - 24471899
Alignment:
Q  478 tggtggcatttagggtgggaatgggaaagagtttttcactataggaaagttttttctgaccattaaattaa 548  Q
    |||||||||||||||||||||||| |||||||||  ||| |||||||||| |||  ||||||||| |||||    
T  24471829 tggtggcatttagggtgggaatggaaaagagtttcccaccataggaaagtctttattgaccattagattaa 24471899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 528
Target Start/End: Complemental strand, 35428207 - 35428158
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagtttttcactataggaaagtt 528  Q
    |||||||||||||||||||||||| ||||||||  |||||| ||||||||    
T  35428207 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagtt 35428158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 421 - 478
Target Start/End: Original strand, 37404642 - 37404699
Alignment:
Q  421 tgtttggttccacgttgaatttaataatttcgcgtcccaatgccaatttgaaggtgat 478  Q
    |||||||||||||||||| || | || ||| || ||||||||||||||||||||||||    
T  37404642 tgtttggttccacgttgagttcactagtttagcatcccaatgccaatttgaaggtgat 37404699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 570
Target Start/End: Complemental strand, 17979163 - 17979071
Alignment:
Q  478 tggtggcatttagggtgggaatgggaaagagtttttcactataggaaagttttttctgaccattaaattaacgggaagtattgattttatcat 570  Q
    |||||||||||||||||||   ||||||||||||| |||||| | ||||||||||   ||||||| ||||  | | |||| ||||||||||||    
T  17979163 tggtggcatttagggtgggtgagggaaagagttttccactatggaaaagtttttttataccattagattagagaggagtactgattttatcat 17979071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 38320420 - 38320488
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagtttttcactataggaaagttttttctgaccattaaatta 547  Q
    ||||||||||||||||||||  |||||||||||  ||| |  ||||||| |||| ||||||||||||||    
T  38320420 ggtggcatttagggtgggaagaggaaagagtttcccaccacgggaaagtgttttttgaccattaaatta 38320488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 548
Target Start/End: Complemental strand, 38321346 - 38321281
Alignment:
Q  483 gcatttagggtgggaatgggaaagagtttttcactataggaaagttttttctgaccattaaattaa 548  Q
    |||||||||||||||| || |||||||||  || |||||||||||  ||| ||||||||| |||||    
T  38321346 gcatttagggtgggaagggaaaagagtttcccattataggaaagtgatttttgaccattagattaa 38321281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 511
Target Start/End: Complemental strand, 24472655 - 24472623
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagttt 511  Q
    ||||||||||||||||||||| |||||||||||    
T  24472655 ggtggcatttagggtgggaataggaaagagttt 24472623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 515 - 587
Target Start/End: Complemental strand, 34372291 - 34372219
Alignment:
Q  515 actataggaaagttttttctgaccattaaattaacgggaagtattgattttatcatagactctctatactata 587  Q
    ||||| |||||||||||| || |||||| ||||| | | |||||| |||||||||| |||| |||| ||||||    
T  34372291 actatgggaaagttttttttgtccattagattaaagaggagtattaattttatcatggactgtctacactata 34372219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 3802858 - 3802790
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagtttttcactataggaaagttttttctgaccattaaatta 547  Q
    ||||||||||||||||||||||||||||| ||| ||||||| ||||| || |||   ||||||||||||    
T  3802858 ggtggcatttagggtgggaatgggaaagaatttctcactatgggaaacttattttataccattaaatta 3802790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 540
Target Start/End: Original strand, 1528561 - 1528622
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagtttttcactataggaaagttttttctgaccat 540  Q
    ||||||||||||||||||   ||||||||||||  |||||| |||||||||||||| |||||    
T  1528561 ggtggcatttagggtgggtgagggaaagagtttcccactatgggaaagttttttcttaccat 1528622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 528
Target Start/End: Original strand, 3802064 - 3802113
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagtttttcactataggaaagtt 528  Q
    |||||||||||||||||||| ||||||||||||  |||||| | ||||||    
T  3802064 ggtggcatttagggtgggaacgggaaagagtttcacactatggaaaagtt 3802113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 540
Target Start/End: Complemental strand, 1128277 - 1128213
Alignment:
Q  476 gatggtggcatttagggtgggaatgggaaagagtttttcactataggaaagttttttctgaccat 540  Q
    |||||||||||||||||||||   | |||||||||| ||||||| |||||||||||||| |||||    
T  1128277 gatggtggcatttagggtgggtgagagaaagagtttctcactatgggaaagttttttcttaccat 1128213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 525
Target Start/End: Complemental strand, 50306571 - 50306525
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagtttttcactataggaaa 525  Q
    |||||||||||||||||||| ||||||||||||  ||| ||||||||    
T  50306571 ggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 50306525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 527
Target Start/End: Original strand, 23379331 - 23379380
Alignment:
Q  478 tggtggcatttagggtgggaatgggaaagagtttttcactataggaaagt 527  Q
    ||||||||||||||||||| | |||||||| |||  ||||||||||||||    
T  23379331 tggtggcatttagggtgggtaagggaaagattttcccactataggaaagt 23379380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 478 - 542
Target Start/End: Original strand, 5504343 - 5504407
Alignment:
Q  478 tggtggcatttagggtgggaatgggaaagagtttttcactataggaaagttttttctgaccatta 542  Q
    ||||||||||||||||||||| ||||||||||||  |||||||| |||||  ||| |||||||||    
T  5504343 tggtggcatttagggtgggaaggggaaagagtttcccactatagaaaagtgatttttgaccatta 5504407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 5505268 - 5505200
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagtttttcactataggaaagttttttctgaccattaaatta 547  Q
    ||||||||||||||||||||  |||||||||||| ||| || ||||||| |||| ||||||||| ||||    
T  5505268 ggtggcatttagggtgggaagaggaaagagttttccaccatgggaaagtgttttttgaccattagatta 5505200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 470
Target Start/End: Original strand, 11977346 - 11977405
Alignment:
Q  411 actaacacattgtttggttccacgttgaatttaataatttcgcgtcccaatgccaatttg 470  Q
    ||||| || |||||||| ||||||||||||||| ||||||||| ||| ||||||||||||    
T  11977346 actaagactttgtttggctccacgttgaatttactaatttcgcatccaaatgccaatttg 11977405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 511
Target Start/End: Complemental strand, 42946519 - 42946485
Alignment:
Q  477 atggtggcatttagggtgggaatgggaaagagttt 511  Q
    |||||||||||||||||||||||||||||||||||    
T  42946519 atggtggcatttagggtgggaatgggaaagagttt 42946485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 570
Target Start/End: Complemental strand, 2992904 - 2992812
Alignment:
Q  478 tggtggcatttagggtgggaatgggaaagagtttttcactataggaaagttttttctgaccattaaattaacgggaagtattgattttatcat 570  Q
    |||||||||||||||||||   ||||||||||||| |||||| | ||||||||||   ||||||| ||||  | | |||| ||||||||||||    
T  2992904 tggtggcatttagggtgggtgagggaaagagttttccactatggaaaagtttttttataccattagattagagaggagtactgattttatcat 2992812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 525
Target Start/End: Complemental strand, 26021959 - 26021913
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagtttttcactataggaaa 525  Q
    |||||||||||||||||||| ||||||||||||  ||| ||||||||    
T  26021959 ggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 26021913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 511
Target Start/End: Complemental strand, 41677073 - 41677041
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagttt 511  Q
    ||||||||||||||||||||||| |||||||||    
T  41677073 ggtggcatttagggtgggaatggaaaagagttt 41677041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 540
Target Start/End: Original strand, 41712965 - 41713026
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagtttttcactataggaaagttttttctgaccat 540  Q
    ||||||||||||||||||   | |||||||||| ||||||| |||||||||||||| |||||    
T  41712965 ggtggcatttagggtgggtgagagaaagagtttctcactatgggaaagttttttcttaccat 41713026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 532
Target Start/End: Original strand, 3820392 - 3820447
Alignment:
Q  477 atggtggcatttagggtgggaatgggaaagagtttttcactataggaaagtttttt 532  Q
    |||||||||||||||||||| | | ||||||||||   ||||||||||||||||||    
T  3820392 atggtggcatttagggtgggtaggtgaaagagtttcctactataggaaagtttttt 3820447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 528
Target Start/End: Complemental strand, 9379845 - 9379794
Alignment:
Q  477 atggtggcatttagggtgggaatgggaaagagtttttcactataggaaagtt 528  Q
    |||||||||||||||||||||  |||||||| |||| |||||| ||||||||    
T  9379845 atggtggcatttagggtgggatggggaaagatttttccactatgggaaagtt 9379794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 570
Target Start/End: Original strand, 34367362 - 34367452
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagtttttcactataggaaagttttttctgaccattaaattaacgggaagtattgattttatcat 570  Q
    ||||||||||||||||||   ||||||||||||| |||||| | |||||||||| | ||||||| ||||  | | |||| ||||||||||||    
T  34367362 ggtggcatttagggtgggtgagggaaagagttttccactatggaaaagttttttat-accattagattagagaggagtactgattttatcat 34367452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 528
Target Start/End: Original strand, 9378729 - 9378778
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagtttttcactataggaaagtt 528  Q
    |||||||||||||||||||| |||||||| |||| ||| || ||||||||    
T  9378729 ggtggcatttagggtgggaaggggaaagatttttccaccatgggaaagtt 9378778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 570
Target Start/End: Complemental strand, 34997767 - 34997698
Alignment:
Q  501 ggaaagagtttttcactataggaaagttttttctgaccattaaattaacgggaagtattgattttatcat 570  Q
    |||||||||||  |||||||||||||| |||| ||||||||| ||||  | | ||||| |||||||||||    
T  34997767 ggaaagagtttcccactataggaaagtgttttttgaccattagattagagaggagtatcgattttatcat 34997698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 519
Target Start/End: Complemental strand, 48381345 - 48381305
Alignment:
Q  479 ggtggcatttagggtgggaatgggaaagagtttttcactat 519  Q
    ||||||||| |||||||||| |||||| |||||||||||||    
T  48381345 ggtggcattcagggtgggaaggggaaaaagtttttcactat 48381305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University