View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4365-Insertion-9 (Length: 502)
Name: NF4365-Insertion-9
Description: NF4365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4365-Insertion-9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 8 - 502
Target Start/End: Complemental strand, 39751059 - 39750569
Alignment:
| Q |
8 |
ctaaattgaaacatgaaatcaattagttagttaatattgttggaattaacttaaaaaataatcagacacaagacatgttcaatatacatattataattat |
107 |
Q |
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| T |
39751059 |
ctaaattgaaacatgaaatcaattagttagttaatattgttggaattaacttaaaaaataatcagacacaagacatgttcaatatacatattataattat |
39750960 |
T |
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| Q |
108 |
aatcatactttagtgcagaatatgtacaaataaatatatgaacaaccttaattagaatcttaccacatgttgttttattaaacatattaggaaaaatgtt |
207 |
Q |
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| T |
39750959 |
aattatactttagtgcagaatatgtacaaataaatatatgaacaacctta----gaatcttaccacatgttgttttattaaacatattaggaaaaatgtt |
39750864 |
T |
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| Q |
208 |
ttaaacatcaagaagaattattggtacctgaggaatacaaagactagcaatagtgaggccagcaagaaaatctttcctaaacttagcaacagtgtagctt |
307 |
Q |
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| T |
39750863 |
ttaaacatcaagaagaattattggtacctgaggaatacaaagactagcaatagtgaggccagcaagaaaatctttcctaaacttagcaacagtgtagctt |
39750764 |
T |
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| Q |
308 |
ctgccccaaacaagaataggaaaaacaacatgcaaaactgagagtaggagtgtgccacatgattgatcacttagagaagaagttttttctctataattag |
407 |
Q |
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| T |
39750763 |
ctgccccaaacaagaataggaaaaacaacatgcaaaactgaaagtaggagtgtgccacatgattgatcacttagagaagaagttttttctctataattag |
39750664 |
T |
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| Q |
408 |
agactgttttcctgaaagaatctaaagccacatgccaaggacttggaggctcaggtgcattaagcacccactgagaccttacatcctgctgaaca |
502 |
Q |
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| T |
39750663 |
agactgttttcctgaaagaatctaaagccacatgccaaggacttggaggctcaggtgcattaagcacccactgagaccttacatcctgctgaaca |
39750569 |
T |
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