View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4365_low_3 (Length: 263)
Name: NF4365_low_3
Description: NF4365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4365_low_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 129 - 263
Target Start/End: Complemental strand, 3311257 - 3311123
Alignment:
| Q |
129 |
attatgtaatatcgacgaccctaaaaggcacccattaaacatcctagaatgagggtggtggggtgtgttagttgatgattatactgatattttcggttgc |
228 |
Q |
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| T |
3311257 |
attatgtaatatcgacaaccctaaaagttacccattaaacaacctagaatgatggtggtggggtgtgttagttgatgattatactgatattttcggttgc |
3311158 |
T |
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| Q |
229 |
acaaatgggaaaagcaaaggagcatttaagagtag |
263 |
Q |
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| T |
3311157 |
gcaagtgggaaaagcaaaggagcatttaagagtag |
3311123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 3311348 - 3311280
Alignment:
| Q |
81 |
tacaaatatcatttctccgtcattcaagtgattaacataaccctttcgattatgtaatatcgacgaccct |
150 |
Q |
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| T |
3311348 |
tacaaatat-atttctccgtcgtttaagtgattaacataaccctttcaattatgtaatatcgacaaccct |
3311280 |
T |
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