View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4366-Insertion-1 (Length: 1115)
Name: NF4366-Insertion-1
Description: NF4366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4366-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 888; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 888; E-Value: 0
Query Start/End: Original strand, 8 - 1096
Target Start/End: Complemental strand, 46667099 - 46665985
Alignment:
| Q |
8 |
actagtgcttccaagaatgagtgctctgctgctattggcttcaagtggatgcttaatcaggtaggtagagtatcctaacacctcaatttacgaatgtatc |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46667099 |
actagtgcttccaagaatgagtgctctgctgctattggctacaagtggatgcttaatcaggtaggtagagtatcctaacacctcaatttacgaatgtatc |
46667000 |
T |
|
| Q |
108 |
gtagaag---------aagggtgtgtttattttttaagtagtatttgattttattgaattgagttgtgctatcaccaaacatatggttaattgaattgca |
198 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
46666999 |
gtagaagttcttaagtaagggtgtgtttattttttaagtagtatttgattttattgaattgagttgtgctattaccaaacatatggttaattgaattgca |
46666900 |
T |
|
| Q |
199 |
tcacttaacgataaaatttatctaactattgtcatatttttcaataaattaagggtttgatggatcatcataaagaaatagttgaatatttggagcaaaa |
298 |
Q |
| |
|
||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46666899 |
tcattttacgataaaatttctctaactattgtcatatttttcaataaattaagggtttgatggatcatcataaagaaatagttgaatatttggagcaaaa |
46666800 |
T |
|
| Q |
299 |
acgagtttctacaatattcttgttcagaagaaatttactccgtagaatggtatctgtactagccaactcctatgacaaagatgtcaagctattgaatgga |
398 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46666799 |
acaagtttctacaatattcttgttcagaagaaatttactccgtagaatggtatctgtactagccaactcctatgacaaagatgtcaagctattgaatgga |
46666700 |
T |
|
| Q |
399 |
acacacaagtctcatgtgcactctacaatggaggtcactgattttttcactctttcttgctataatcttttttggttttaaatctgatcctgttatgctt |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46666699 |
acacacaagtctcatgtgcactctacaatggaggtcactgattttttcactctttcttgctataatcttttttggttttaaatctgatcctgttatgctt |
46666600 |
T |
|
| Q |
499 |
ctgcaggctacaattcttgcaaagtataagccaaaaatcaatgtcacgttattgataccagaactaaagaaaacaaatgagacaattgcaaaagccatat |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46666599 |
ctgcaggctacaattcttgcaaagtataagccaaaaatcaatgtcacgttattgataccagaactaaagaaaacaaatgagacaattgcaaaagccatat |
46666500 |
T |
|
| Q |
599 |
catattttaagagcattcgacacgttgttctttactacgaggatcttgttaacaaccgcacggtaagactttgtgcatgcttagattcatagtaaaattg |
698 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46666499 |
catattttaaaagcattcgacacattgttctttactacgaggatcttgttaacaaccgcacggtaagactttgtgcatgcttagattcatagtaaaattg |
46666400 |
T |
|
| Q |
699 |
acacaccataattctacaacc-tttgtgcttgcttagactttctatatatgtttctgaatgtttcatgatacagaaattgaaggatgttcaagaattttt |
797 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46666399 |
acacaccataattctacaaccttttgtgcttgcttagactttctatatatgtttctgaatgtttcatgatacagaaattgaaggatgttcaagaattttt |
46666300 |
T |
|
| Q |
798 |
gaaggtgccatatagagaactagagagtcgacaagtcaagatacatactgcaccattgtcaatgcaaattgaaaattgggacgaagttcagaaaacattg |
897 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46666299 |
gaaggtgccatatagagaactagagagtcgacaagtcaagatacatactgctccattgtcaatgcaaattgaaaattgggacgaagttcagaaaacattg |
46666200 |
T |
|
| Q |
898 |
actgggacgtcgtatgagagttttctctac-aagattaatc-agatcaaatgtagcagactttgtcat-agatcattagagc-acatc-atagact-ata |
991 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| ||| |
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|
| T |
46666199 |
actgggacgtcgtatgagagttttctctacaaagattaatcaagatcaaatgtagcagactttgtcataagatcattagagcaacatcaatagactaata |
46666100 |
T |
|
| Q |
992 |
ctctcat--atc--ttaatattgcgttttgaacactctttctttgtacatatgaaa--ttattttatgtt--agta-tttttcg-atggtgattgtagat |
1081 |
Q |
| |
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||||||| ||| | |||||||||||||||| || | |||||||||||||||| |||||||||||| ||| ||||||| | ||||||||||||| |
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| T |
46666099 |
ctctcattaatccttaaatattgcgttttgaa-acaactcctttgtacatatgaaaatttattttatgtttaggtattttttcgaacggtgattgtagat |
46666001 |
T |
|
| Q |
1082 |
atttt-gtcaatattt |
1096 |
Q |
| |
|
||||| |||||||||| |
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|
| T |
46666000 |
attttggtcaatattt |
46665985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 6521941 - 6522001
Alignment:
| Q |
10 |
tagtgcttccaagaatgagtgctctgctgctattggcttcaagtggatgcttaatcaggta |
70 |
Q |
| |
|
||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| |
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|
| T |
6521941 |
tagtgcttccaagaatgagtgttctgccgcaattggcttcaagtggatgcttaatcaggta |
6522001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 250 - 437
Target Start/End: Original strand, 6117722 - 6117909
Alignment:
| Q |
250 |
agggtttgatggatcatcataaagaaatagttgaatatttggagcaaaaacgagtttctacaatattcttgttcagaagaaatttactccgtagaatggt |
349 |
Q |
| |
|
||||||||||||| |||||||| || ||||| ||||| || | |||| |||||||| |||||||| | || ||||| ||||| || ||||| || |
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| T |
6117722 |
agggtttgatggagcatcataaggagatagtagaatacttccaaagaaaaggagtttctgcaatattccttttaagaaggaatttgctaagtagatcagt |
6117821 |
T |
|
| Q |
350 |
atctgtactagccaactcctatgacaaagatgtcaagctattgaatggaacacacaagtctcatgtgcactctacaatggaggtcact |
437 |
Q |
| |
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|||||| ||||| || |||||||||||| ||| ||| | | |||||||| ||||| |||||||| ||||| ||||| ||||||||| |
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| T |
6117822 |
atctgtgctagcaaattcctatgacaaacatgccaaacagctcaatggaacccacaaatctcatgtccactccacaatagaggtcact |
6117909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 835 - 884
Target Start/End: Original strand, 6118425 - 6118474
Alignment:
| Q |
835 |
aagatacatactgcaccattgtcaatgcaaattgaaaattgggacgaagt |
884 |
Q |
| |
|
||||| || |||||||| ||||||| |||||||||||||||||| ||||| |
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|
| T |
6118425 |
aagattcacactgcaccgttgtcaaagcaaattgaaaattgggatgaagt |
6118474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 33930306 - 33930366
Alignment:
| Q |
10 |
tagtgcttccaagaatgagtgctctgctgctattggcttcaagtggatgcttaatcaggta |
70 |
Q |
| |
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||||||||| || ||||||||| | |||||| ||||||| ||||||||||||||||||||| |
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| T |
33930306 |
tagtgcttctaaaaatgagtgcacggctgctgttggcttgaagtggatgcttaatcaggta |
33930366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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