View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4366-Insertion-2 (Length: 784)
Name: NF4366-Insertion-2
Description: NF4366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4366-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 7 - 542
Target Start/End: Original strand, 252612 - 253146
Alignment:
| Q |
7 |
attaaatagttttcaaaatttgatgaaaagttgtggagttgatctagtaaatacgactttaaatttaaccgtttgattggttaaatatgatttttataag |
106 |
Q |
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| T |
252612 |
attaaatagttttcaaaatttgatgaaaagttgtggagttgatctggtaaatacgacttttaatttaaccgtttgattggttaaatatgatttttataag |
252711 |
T |
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| Q |
107 |
aattattaaactaaacaactccactcagattgctcatagagaaacttgatccaccnnnnnnnnnnaacctcaacacttcgattcattaagagatatatat |
206 |
Q |
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| T |
252712 |
aattattaaactaaacaactccactcagattgctcatagagaaacttgatccacctattttttttaacctcaacacttcgattcattaagagatatatat |
252811 |
T |
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| Q |
207 |
-tttttattaatgtggagttcaatctaaaattaattaaaaatatgattagttaaaactgtttctatcaaagaaaaaactttgatattattcaaagaattc |
305 |
Q |
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| T |
252812 |
atttttattaatgtggagttcaatctaaaagtaattaaaaatatgattagttaaaactgtttctatcaaagaaaaaactttgatattattcaaagaattc |
252911 |
T |
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| Q |
306 |
aaacaatatacctcgaaatcattaactctttgagcgcaactatttagttaattttatgtagctccctatagtccatattatgcaaagacatgcaattata |
405 |
Q |
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| T |
252912 |
aaacaatatacctcgaagtcattaactctttgagcgcaactatttagttaattttatgtagctcccta--gtccatattatgcaaagacatgcaattata |
253009 |
T |
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| Q |
406 |
ggttaatagtaaacgattaaccatgcttttatttcataattttagtatcattaaatatatttaatattaaattaacctgttgtaggtaaaatgagaggtc |
505 |
Q |
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| T |
253010 |
ggttaatagtaaacgattaaccatgcttttatttcataattttagtatcattaaatatatttaatattaaattaacctgttgtaggtaaaatgagaggtc |
253109 |
T |
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| Q |
506 |
tatggttttcttttgtgacaaagtgagaggtctatgg |
542 |
Q |
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| T |
253110 |
tatggttttcttttgtgacaaagtgagaggtctatgg |
253146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 610 - 699
Target Start/End: Original strand, 253208 - 253297
Alignment:
| Q |
610 |
ctactatttcagatgtaaaaaagccagattcaaacccataatttcttgtacaacagtagattttgtcaataaagtagggttagagatatc |
699 |
Q |
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| T |
253208 |
ctactatttcagatgtaaaaaaaccagattcaaaccaataatttcttgtacaacagtaggttttgtcaataaaatagggttagagatatc |
253297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 723 - 784
Target Start/End: Original strand, 253322 - 253383
Alignment:
| Q |
723 |
taaggttagagattttgtatgtgtgggagtacactttacannnnnnncttcctatgattcca |
784 |
Q |
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| T |
253322 |
taaggttagagattttgtatgtgtgggagtacactttacatttttttcttcctatgattcca |
253383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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