View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4366_low_1 (Length: 460)
Name: NF4366_low_1
Description: NF4366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4366_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Original strand, 55173852 - 55174275
Alignment:
| Q |
18 |
atacatacccgtggttccattcggcttggatgaacggtccaaccctgagggtcacgtacattccttttgattgaacaagcctaatgaacttcaccaaatc |
117 |
Q |
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| T |
55173852 |
atacatacccgtggttccattcggcttggatgaacggtccaaccctgagggtcacgtacattccttttgattgaacaagcctaatgaacttcaccaaatc |
55173951 |
T |
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| Q |
118 |
attgttgccttcaaagttgaactgcataacgtttgataaacaaattaagtttacaatcaaatgttccatacattgagtcaagagattaattttgtcattt |
217 |
Q |
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| T |
55173952 |
attgttgccttcaaaattgaactgcataacgtttgataaacaaattaagtttacaatcaaatgttccatacattgagtcaagagattaattttgtcattt |
55174051 |
T |
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| Q |
218 |
aattaatcatataccttgccttgctctggctcatgagcgttccaaaacacgtaagtttgaataacgttcaaacctccatgtcttgccttatcaagaatgt |
317 |
Q |
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| T |
55174052 |
aattaatcatataccttgccttgctctggctcatgagcgttccaaaacacgtaagtttgaataacgttcaaacctccatgtcttgccttatcaagaatgt |
55174151 |
T |
|
| Q |
318 |
ctggccacgcctgaaaagtacaacatcaatcaatcttatgaatccatcatttgttgttgttatattattgtaatgatcatggatgtagtaattnnnnnnn |
417 |
Q |
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| T |
55174152 |
ctggccacgcctgaaaagtacaacatcaatcaatcttatgaatccatcatctgttgttattatattattgtaatgatcatggatgtagtgattaaataaa |
55174251 |
T |
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| Q |
418 |
nnnccatgaatgaattatacatca |
441 |
Q |
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| T |
55174252 |
aaaccatgaatgaattatacatca |
55174275 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 27720699 - 27720600
Alignment:
| Q |
20 |
acatacccgtggttccattcggcttggatgaacggtccaaccctgagggtcacgtacattccttttgattgaacaagcctaatgaacttcaccaaatcat |
119 |
Q |
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||||||||||| |||||||| ||||||||||| || |||| || ||||| || ||||||||||| ||| |||||| ||| ||| ||||||||||||| |
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| T |
27720699 |
acatacccgtgattccattcagcttggatgaaagggccaattctaagggtaacatacattcctttctcttgtacaagcttaaggaatttcaccaaatcat |
27720600 |
T |
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