View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4366_low_4 (Length: 237)

Name: NF4366_low_4
Description: NF4366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4366_low_4
NF4366_low_4
[»] chr4 (33 HSPs)
chr4 (23-220)||(45801868-45802065)
chr4 (17-89)||(578850-578922)
chr4 (20-89)||(30258217-30258286)
chr4 (17-89)||(41172465-41172537)
chr4 (17-82)||(18470312-18470377)
chr4 (17-89)||(10216342-10216414)
chr4 (17-89)||(10981392-10981464)
chr4 (17-89)||(12584377-12584449)
chr4 (17-89)||(13211870-13211942)
chr4 (17-89)||(13621405-13621477)
chr4 (17-89)||(14202961-14203033)
chr4 (17-89)||(49970650-49970722)
chr4 (17-82)||(3818799-3818864)
chr4 (17-89)||(13621153-13621224)
chr4 (17-89)||(21519786-21519858)
chr4 (17-89)||(48560053-48560125)
chr4 (17-89)||(50182230-50182302)
chr4 (20-82)||(5046738-5046800)
chr4 (17-81)||(5157053-5157117)
chr4 (17-89)||(13371266-13371338)
chr4 (17-89)||(13381467-13381539)
chr4 (17-89)||(17181005-17181077)
chr4 (17-89)||(42808002-42808074)
chr4 (17-89)||(30820579-30820652)
chr4 (17-90)||(34683138-34683211)
chr4 (17-89)||(6214038-6214110)
chr4 (17-89)||(7630112-7630184)
chr4 (20-76)||(17745206-17745262)
chr4 (18-90)||(26958594-26958665)
chr4 (50-89)||(16553494-16553533)
chr4 (20-81)||(17377551-17377612)
chr4 (49-82)||(43639067-43639100)
chr4 (15-89)||(51784059-51784135)
[»] chr7 (30 HSPs)
chr7 (17-89)||(48193189-48193261)
chr7 (17-82)||(27597056-27597121)
chr7 (17-89)||(12080735-12080807)
chr7 (17-89)||(20516956-20517028)
chr7 (17-89)||(28605478-28605550)
chr7 (17-82)||(8048065-8048130)
chr7 (17-82)||(22479242-22479307)
chr7 (18-87)||(27811979-27812048)
chr7 (17-89)||(7437888-7437960)
chr7 (17-89)||(14719083-14719155)
chr7 (17-89)||(24720297-24720369)
chr7 (17-89)||(38876257-38876329)
chr7 (17-82)||(14777963-14778028)
chr7 (17-82)||(15230101-15230166)
chr7 (17-82)||(32852893-32852958)
chr7 (17-89)||(34986561-34986633)
chr7 (17-89)||(45225296-45225368)
chr7 (17-89)||(45225429-45225501)
chr7 (19-76)||(33889120-33889177)
chr7 (17-82)||(48454641-48454706)
chr7 (17-89)||(11327632-11327704)
chr7 (17-89)||(26380165-26380237)
chr7 (18-73)||(1325335-1325390)
chr7 (17-82)||(4655081-4655146)
chr7 (17-66)||(18199604-18199653)
chr7 (17-89)||(18123171-18123243)
chr7 (17-82)||(43711948-43712014)
chr7 (40-89)||(14770134-14770183)
chr7 (40-89)||(15220585-15220634)
chr7 (48-89)||(18352405-18352446)
[»] chr2 (23 HSPs)
chr2 (15-93)||(4293302-4293380)
chr2 (18-82)||(15554131-15554195)
chr2 (17-89)||(324990-325062)
chr2 (17-89)||(9690260-9690332)
chr2 (17-89)||(20939812-20939884)
chr2 (17-82)||(33173531-33173596)
chr2 (20-89)||(44257493-44257562)
chr2 (17-89)||(22302080-22302152)
chr2 (17-89)||(22711135-22711207)
chr2 (17-89)||(39904686-39904758)
chr2 (17-89)||(39906372-39906444)
chr2 (20-89)||(38986994-38987063)
chr2 (17-89)||(2586413-2586485)
chr2 (18-82)||(6332385-6332449)
chr2 (17-82)||(3769486-3769551)
chr2 (17-89)||(7682107-7682178)
chr2 (23-89)||(44542887-44542953)
chr2 (17-89)||(9689478-9689550)
chr2 (18-82)||(17265366-17265429)
chr2 (17-73)||(30406579-30406635)
chr2 (50-89)||(33739635-33739674)
chr2 (20-82)||(29403983-29404044)
chr2 (53-89)||(42850104-42850140)
[»] chr6 (17 HSPs)
chr6 (17-89)||(9955887-9955959)
chr6 (17-89)||(27828403-27828475)
chr6 (15-82)||(5187868-5187935)
chr6 (17-89)||(29646250-29646322)
chr6 (17-89)||(31132968-31133040)
chr6 (17-82)||(1369997-1370062)
chr6 (17-89)||(4184351-4184423)
chr6 (17-89)||(8171910-8171982)
chr6 (17-89)||(15962829-15962901)
chr6 (18-89)||(16599161-16599232)
chr6 (20-89)||(26667957-26668026)
chr6 (17-89)||(11100472-11100544)
chr6 (17-81)||(20755455-20755519)
chr6 (18-89)||(15718241-15718311)
chr6 (17-82)||(10778042-10778107)
chr6 (21-76)||(10315307-10315363)
chr6 (50-90)||(14488362-14488402)
[»] chr3 (30 HSPs)
chr3 (17-89)||(7521388-7521460)
chr3 (17-89)||(994814-994886)
chr3 (17-89)||(38798008-38798080)
chr3 (17-90)||(6109256-6109329)
chr3 (17-89)||(7848557-7848629)
chr3 (17-89)||(995120-995193)
chr3 (17-82)||(17226274-17226339)
chr3 (17-82)||(37504571-37504636)
chr3 (17-82)||(45059632-45059697)
chr3 (17-89)||(4043658-4043730)
chr3 (17-89)||(11460180-11460252)
chr3 (17-89)||(26158325-26158397)
chr3 (17-90)||(2868255-2868328)
chr3 (17-82)||(6114811-6114876)
chr3 (17-82)||(6748749-6748814)
chr3 (17-82)||(21727675-21727740)
chr3 (17-89)||(47461724-47461796)
chr3 (17-72)||(27728221-27728276)
chr3 (20-66)||(17065759-17065805)
chr3 (20-89)||(51952234-51952304)
chr3 (17-66)||(51148127-51148176)
chr3 (17-89)||(12896667-12896739)
chr3 (17-89)||(26152290-26152362)
chr3 (17-71)||(27800494-27800548)
chr3 (48-89)||(1376094-1376135)
chr3 (17-89)||(3544318-3544391)
chr3 (48-89)||(32203208-32203249)
chr3 (17-89)||(8815362-8815433)
chr3 (53-89)||(27317699-27317735)
chr3 (20-76)||(34277589-34277644)
[»] chr5 (21 HSPs)
chr5 (17-82)||(27005178-27005243)
chr5 (17-82)||(3960736-3960801)
chr5 (17-89)||(15808994-15809066)
chr5 (17-89)||(30688006-30688078)
chr5 (17-76)||(1797436-1797495)
chr5 (17-92)||(30486133-30486208)
chr5 (20-82)||(7014552-7014614)
chr5 (18-88)||(33282280-33282350)
chr5 (17-89)||(1951524-1951596)
chr5 (17-89)||(17605064-17605136)
chr5 (21-89)||(29302196-29302264)
chr5 (17-89)||(33026251-33026323)
chr5 (17-76)||(14795715-14795774)
chr5 (17-89)||(4736818-4736887)
chr5 (17-89)||(11448756-11448828)
chr5 (18-89)||(26905922-26905991)
chr5 (20-89)||(17209967-17210033)
chr5 (15-89)||(30667671-30667743)
chr5 (39-89)||(12910113-12910163)
chr5 (48-89)||(3038937-3038978)
chr5 (15-59)||(4150980-4151024)
[»] chr1 (22 HSPs)
chr1 (17-89)||(13943351-13943423)
chr1 (17-89)||(27389511-27389583)
chr1 (17-89)||(36817739-36817811)
chr1 (17-90)||(12864316-12864389)
chr1 (17-90)||(16960370-16960443)
chr1 (17-89)||(1805012-1805084)
chr1 (17-89)||(14387489-14387561)
chr1 (17-89)||(39424357-39424429)
chr1 (17-89)||(52772335-52772407)
chr1 (17-82)||(20411293-20411358)
chr1 (17-89)||(47130938-47131011)
chr1 (17-89)||(13385758-13385830)
chr1 (17-89)||(14494458-14494530)
chr1 (17-89)||(32716430-32716502)
chr1 (17-89)||(43236251-43236323)
chr1 (20-76)||(51465049-51465104)
chr1 (20-82)||(27348223-27348284)
chr1 (17-66)||(28094455-28094504)
chr1 (17-82)||(32374563-32374628)
chr1 (17-89)||(27255741-27255813)
chr1 (17-73)||(28764654-28764709)
chr1 (53-89)||(34515220-34515256)
[»] scaffold0068 (1 HSPs)
scaffold0068 (20-89)||(57932-58001)
[»] chr8 (18 HSPs)
chr8 (17-82)||(14826325-14826390)
chr8 (20-89)||(19971468-19971537)
chr8 (20-89)||(21021276-21021345)
chr8 (17-89)||(9483740-9483812)
chr8 (17-76)||(25281054-25281113)
chr8 (17-89)||(1783093-1783165)
chr8 (17-89)||(31071644-31071716)
chr8 (18-82)||(18804887-18804950)
chr8 (17-89)||(21442220-21442291)
chr8 (17-89)||(30577960-30578032)
chr8 (17-76)||(41942960-41943019)
chr8 (36-82)||(17884037-17884083)
chr8 (28-89)||(21442395-21442456)
chr8 (17-73)||(42556441-42556497)
chr8 (50-89)||(1281950-1281989)
chr8 (17-57)||(2178740-2178780)
chr8 (50-82)||(13290594-13290626)
chr8 (50-82)||(23544858-23544890)
[»] scaffold0074 (1 HSPs)
scaffold0074 (17-89)||(26143-26215)
[»] scaffold0002 (1 HSPs)
scaffold0002 (17-89)||(452457-452529)
[»] scaffold0119 (2 HSPs)
scaffold0119 (20-89)||(2767-2836)
scaffold0119 (20-89)||(14822-14891)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 45801868 - 45802065
Alignment:
Q  23 ttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctatataataaaccattatttcacataaaaactatatt 122  Q
    ||||||||||| ||| ||||||| || ||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||    
T  45801868 ttagttattcacttgctaaaatactccttctaaaaaataagtggatgtattctaacaaatgcctatattataaaccgttatttcacataaaaactatatt 45801967  T
Q  123 gctttatttctcaatttacttagtgtaactaatgaaacaatacttttcatttaaaacaattaaattaaagtaactaatcatctcttgaaaagccacag 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45801968 gctttatttctcaatttacttagtgtaactaatgaaacaatacttttcatttaaaacaattaaattaaagtaattaatcatctcttgaaaagccacag 45802065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 578922 - 578850
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||| ||||| ||||||    
T  578922 cactttttagttattcatttgctaaaatactcattctaaaaaataagtgggtgtattctagcaaatgcctata 578850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 30258286 - 30258217
Alignment:
Q  20 tttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||| ||||| ||||||    
T  30258286 tttttagttattcatttgctaaaatactcattctaaaaaataagtgggtgtattctagcaaatgcctata 30258217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 41172465 - 41172537
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||| ||||| ||||||    
T  41172465 cactttttagttattcacttgctaaaatactcattctaaaaaataagtgggtgtattctagcaaatgcctata 41172537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 18470312 - 18470377
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||||| |||||||||||||||    
T  18470312 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtattctaacaaat 18470377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 10216414 - 10216342
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  10216414 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 10216342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 10981464 - 10981392
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||| ||||||||||||||||||||| ||||| ||||||    
T  10981464 cactttttagttattcacttgctaaaatactccttctagaaaataagtggatgtattctagcaaatgcctata 10981392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 12584449 - 12584377
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  12584449 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 12584377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 13211870 - 13211942
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  13211870 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 13211942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 13621477 - 13621405
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||| ||| ||||| ||||||    
T  13621477 cactttttagttattcacttgctaaaatactcattctaaaaaataagtgggtgtatcctagcaaatgcctata 13621405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 14203033 - 14202961
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||||||||||| || ||| ||||||| |||||||||||||||||||| ||||||||| ||||| ||||||    
T  14203033 cactttttagttatccacttgctaaaatactcattctaaaaaataagtgggtgtattctagcaaatgcctata 14202961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 49970650 - 49970722
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||||||  ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  49970650 cactttttagttattcattttctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 49970722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 3818799 - 3818864
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||| |||||    
T  3818799 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaat 3818864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 13621153 - 13621224
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||| ||| ||||| ||||||    
T  13621153 cactttttagttattcacttgctaaaatactcattctaaaaaataagtgg-tgtatcctagcaaatgcctata 13621224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 21519786 - 21519858
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||| ||||| ||||||| |  ||||||||||||||||| ||||||||| ||||| ||||||    
T  21519786 cactttttagttattgatttgctaaaatacttcttctaaaaaataagtgggtgtattctagcaaatgcctata 21519858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 48560053 - 48560125
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||| | ||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  48560053 cactttttagttattaaattgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 48560125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 50182230 - 50182302
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| |  ||||||||||||||||  ||||||||||||||| ||||||    
T  50182230 cactttttagttattcacttgctaaaatactgcttctaaaaaataagtgagtgtattctaacaaatgcctata 50182302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 5046800 - 5046738
Alignment:
Q  20 tttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    |||||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||| |||||    
T  5046800 tttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaat 5046738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 5157053 - 5157117
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaa 81  Q
    ||||||||||||||||| ||  ||||||| || ||||||||||||||||| ||||||||| ||||    
T  5157053 cactttttagttattcacttactaaaatactccttctaaaaaataagtgggtgtattctagcaaa 5157117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 13371266 - 13371338
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||  ||||||| || |||||||| |||||||| ||||||||| ||||| ||||||    
T  13371266 cactttttagttattcacttactaaaatactccttctaaaacataagtggttgtattctagcaaatgcctata 13371338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 13381467 - 13381539
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||  ||||||| || |||||||| |||||||| ||||||||| ||||| ||||||    
T  13381467 cactttttagttattcacttactaaaatactccttctaaaacataagtggttgtattctagcaaatgcctata 13381539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 17181005 - 17181077
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||| | |||  |||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  17181005 cactttttagttattaaattgcaaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 17181077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 42808074 - 42808002
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||| ||||||| ||||| ||| ||||| ||||||    
T  42808074 cactttttagttattcacttgctaaaatactccttctaaaaactaagtgggtgtatcctagcaaatgcctata 42808002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 30820652 - 30820579
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattct-aaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || |||| ||||||||||||| ||| ||||| ||||| ||||||    
T  30820652 cactttttagttattcacttggtaaaatactccttctaaaaaaataagtgggtgtcttctagcaaatgcctata 30820579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 34683211 - 34683138
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctatat 90  Q
    ||||||||||||||| | ||| ||||||| || ||||||||| ||||||| ||||| ||| ||||| |||||||    
T  34683211 cactttttagttatttaattgctaaaatactccttctaaaaactaagtgggtgtatcctagcaaatgcctatat 34683138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 6214038 - 6214110
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| |  ||||||||| ||||||| ||||| ||| ||||| ||||||    
T  6214038 cactttttagttattcacttgctaaaatacttcttctaaaaactaagtgggtgtatcctagcaaatgcctata 6214110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 7630112 - 7630184
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||  ||||||| ||||| ||| ||||| ||||||    
T  7630112 cactttttagttattcacttgctaaaatactccttctaaaatctaagtgggtgtatcctagcaaatgcctata 7630184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 17745206 - 17745262
Alignment:
Q  20 tttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattcta 76  Q
    |||||||||||||| ||| ||||||| || |||||||||||| |||| |||||||||    
T  17745206 tttttagttattcacttgctaaaatactccttctaaaaaataggtgggtgtattcta 17745262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 26958594 - 26958665
Alignment:
Q  18 actttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctatat 90  Q
    |||||||||||||  ||||| ||||| |  ||||||||||||||||||| ||||||||| ||||| |||||||    
T  26958594 actttttagttata-atttgctaaaacacacattctaaaaaataagtgggtgtattctagcaaatgcctatat 26958665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 89
Target Start/End: Original strand, 16553494 - 16553533
Alignment:
Q  50 ttctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  16553494 ttctaaaaaataagtggatgtattctagcaaatgcctata 16553533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 17377551 - 17377612
Alignment:
Q  20 tttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaa 81  Q
    |||||||||||||| ||| ||||||| || ||||||||| ||||||| ||||| ||| ||||    
T  17377551 tttttagttattcacttgctaaaatactccttctaaaaactaagtgggtgtatcctagcaaa 17377612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 43639067 - 43639100
Alignment:
Q  49 attctaaaaaataagtggatgtattctaacaaat 82  Q
    |||||||||||||||||| |||||||||||||||    
T  43639067 attctaaaaaataagtgggtgtattctaacaaat 43639100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 51784135 - 51784059
Alignment:
Q  15 atcactttttagttattcatttgttaaaata-ttcattctaaaaaataagt-ggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||||  ||||||| | | ||||||||||||||| || ||||||||| ||||| ||||||    
T  51784135 atcactttttagttatttatttactaaaatactcccttctaaaaaataagtagggtgtattctagcaaatgcctata 51784059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 48193189 - 48193261
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| ||||||    
T  48193189 cactttttagttattcatttgttaaaatactccttctaaaaaataagtgggtgtattctaacaaatgcctata 48193261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 27597056 - 27597121
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  27597056 cactttttagttatttatttgctaaaatactcattctaaaaaataagtggatgtattctagcaaat 27597121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 12080735 - 12080807
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||| ||||| ||||||    
T  12080735 cactttttagttattcacttgctaaaatactcattctaaaaaataagtgggtgtattctagcaaatgcctata 12080807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 20516956 - 20517028
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  20516956 cactttttagttattcatttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 20517028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 28605478 - 28605550
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||| ||||||||||||    
T  28605478 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatacctata 28605550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 8048130 - 8048065
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||||||| ||||||||| |||||    
T  8048130 cactttttagttattcatttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaat 8048065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 22479242 - 22479307
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||||||| ||||||||| |||||    
T  22479242 cactttttagttattcatttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaat 22479307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 27811979 - 27812048
Alignment:
Q  18 actttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaataccta 87  Q
    |||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||| ||||| ||||    
T  27811979 actttttagttattcacttgttaaaatactccttctaaaaaataagtgggtgtattctagcaaatgccta 27812048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 7437960 - 7437888
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||| ||| ||||||||| ||||| ||||||    
T  7437960 cactttttagttattcacttgctaaaatactcattctaaaaaataattgggtgtattctagcaaatgcctata 7437888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 14719155 - 14719083
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||| | ||||| ||||||    
T  14719155 cactttttagttattcacttgttaaaatactccttctaaaaaataagtgggtgtattccagcaaatgcctata 14719083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 24720297 - 24720369
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||| ||||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  24720297 cactttttagttatttatttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 24720369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 38876329 - 38876257
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  38876329 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 38876257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 14777963 - 14778028
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||| |||||    
T  14777963 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaat 14778028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 15230101 - 15230166
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||| |||||    
T  15230101 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaat 15230166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 32852893 - 32852958
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||| |||||    
T  32852893 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaat 32852958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 34986561 - 34986633
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||||||||| |||| ||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  34986561 cactttttagttcttcacttgctaaaatactctttctaaaaaataagtgggtgtattctagcaaatgcctata 34986633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 45225296 - 45225368
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||| | ||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  45225296 cactttttagttattaacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 45225368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 45225429 - 45225501
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||| | ||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  45225429 cactttttagttattaacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 45225501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 33889120 - 33889177
Alignment:
Q  19 ctttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattcta 76  Q
    ||||||||||||||| ||| ||||||| || ||||||||||||||||| |||||||||    
T  33889120 ctttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtattcta 33889177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 48454706 - 48454641
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    |||||||||||| |||| ||| ||||||| || ||||||||||||||||| ||||||||| |||||    
T  48454706 cactttttagttcttcacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaat 48454641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 11327632 - 11327704
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||| ||||||| ||||| ||| ||||| ||||||    
T  11327632 cactttttagttattcacttgctaaaatactccttctaaaaactaagtgggtgtatcctagcaaatgcctata 11327704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 26380237 - 26380165
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| |||||||||||| |||| || ||||| ||| ||||| ||||||    
T  26380237 cactttttagttattcacttgctaaaatactcattctaaaaactaagcgggtgtatcctagcaaatgcctata 26380165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 1325390 - 1325335
Alignment:
Q  18 actttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtatt 73  Q
    |||||||||||||||| ||| ||||||| || ||||||||||||||||| ||||||    
T  1325390 actttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtatt 1325335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 4655081 - 4655146
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||| ||| ||||||| || ||||||||| ||||||| |||||| || |||||    
T  4655081 cactttttagttattcacttgctaaaatactccttctaaaaactaagtgggtgtattttagcaaat 4655146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 18199604 - 18199653
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtgg 66  Q
    ||||||||||||||||| ||| ||||||| || |||||||||||||||||    
T  18199604 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgg 18199653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 18123243 - 18123171
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||  ||||||| || ||||||||| ||||||| ||||| ||| ||||| ||||||    
T  18123243 cactttttagttattcacttactaaaatactccttctaaaaactaagtgggtgtatcctagcaaatgcctata 18123171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 43711948 - 43712014
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattct-aaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||| ||| ||||||| || |||| ||||||||||||| | ||||||| |||||    
T  43711948 cactttttagttattcacttgctaaaatactccttctaaaaaaataagtgggtatattctagcaaat 43712014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 14770134 - 14770183
Alignment:
Q  40 aaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  14770134 aaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 14770183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 15220585 - 15220634
Alignment:
Q  40 aaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  15220585 aaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 15220634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 18352446 - 18352405
Alignment:
Q  48 cattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||    
T  18352446 cattctaaaaaataagtgggtgtattctagcaaatgcctata 18352405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 4293380 - 4293302
Alignment:
Q  15 atcactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctatataat 93  Q
    ||||||||||||||||| ||||| ||||||| || ||||||||||||||||| ||||||||| ||||||||||||||||    
T  4293380 atcactttttagttattgatttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatacctatataat 4293302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 15554195 - 15554131
Alignment:
Q  18 actttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||    
T  15554195 actttttagttattcatttgctaaaatactcattctaaaaaataagtgggtgtattctaacaaat 15554131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 325062 - 324990
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||| | ||||||||| ||||| ||||||    
T  325062 cactttttagttattcatttgttaaaatactccttctaaaaaataagttggtgtattctagcaaatgcctata 324990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 9690332 - 9690260
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  9690332 cactttttagttattgatttgttaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 9690260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 20939884 - 20939812
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||| ||||| ||||||    
T  20939884 cactttttagttattcacttgctaaaatactcattctaaaaaataagtgggtgtattctagcaaatgcctata 20939812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 33173531 - 33173596
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||||||| ||||||||| |||||    
T  33173531 cactttttagttattcatttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaat 33173596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 44257493 - 44257562
Alignment:
Q  20 tttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||| ||||| ||||||    
T  44257493 tttttagttattcacttgctaaaatactcattctaaaaaataagtgggtgtattctagcaaatgcctata 44257562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 22302152 - 22302080
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| |||||||||| ||||||||| ||||||||| ||||| ||||||    
T  22302152 cactttttagttattcacttgctaaaatactcattctaaacaataagtgggtgtattctagcaaatgcctata 22302080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 22711207 - 22711135
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||| ||||  ||||||| || ||||||||||||||||||||||||||| ||||| ||||||    
T  22711207 cactttttagttatttatttactaaaatactccttctaaaaaataagtggatgtattctagcaaatgcctata 22711135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 39904686 - 39904758
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||| ||||||| ||| ||||||| |||||||||||||||||||| ||||||||| ||||| ||||||    
T  39904686 cactttttaattattcacttgctaaaatactcattctaaaaaataagtgggtgtattctagcaaatgcctata 39904758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 39906444 - 39906372
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  39906444 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 39906372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 38986994 - 38987063
Alignment:
Q  20 tttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||||||||||| ||||||||||| || ||||||||  ||||||||||||||||| ||||| ||||||    
T  38986994 tttttagttattcacttgttaaaatactccttctaaaatgtaagtggatgtattctagcaaatgcctata 38987063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 2586413 - 2586485
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||||| |||||||||||| ||||||| || ||||||||||||||| | ||||||||| ||||| ||||||    
T  2586413 cacttttttgttattcatttgctaaaatactccttctaaaaaataagtaggtgtattctagcaaatgcctata 2586485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 6332449 - 6332385
Alignment:
Q  18 actttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    |||||||||||||||||||| ||||||| || || |||||||||||||| ||||||||| |||||    
T  6332449 actttttagttattcatttgctaaaatactccttttaaaaaataagtgggtgtattctagcaaat 6332385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 3769486 - 3769551
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||||| ||| ||||| |||||    
T  3769486 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtgttctagcaaat 3769551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 7682178 - 7682107
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || |||||||||| |||||| ||||||||| ||||| ||||||    
T  7682178 cactttttagttattcacttgctaaaatactccttctaaaaaa-aagtgggtgtattctagcaaatgcctata 7682107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 44542887 - 44542953
Alignment:
Q  23 ttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||| | ||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  44542887 ttagttatttacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 44542953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 9689550 - 9689478
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||| ||||| ||| ||||||| || ||||||||| ||||||| ||||| ||| ||||| ||||||    
T  9689550 cactttttagtaattcacttgctaaaatactccttctaaaaactaagtgggtgtatcctagcaaatgcctata 9689478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 17265429 - 17265366
Alignment:
Q  18 actttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    |||| |||||||| |||||| ||||||| || ||||||||||||||||| ||||||||| |||||    
T  17265429 acttcttagttat-catttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaat 17265366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 30406635 - 30406579
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtatt 73  Q
    ||||||||||||||| ||||| ||||||| ||  |||||||||||||||| ||||||    
T  30406635 cactttttagttattgatttgctaaaatactccatctaaaaaataagtgggtgtatt 30406579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 33739674 - 33739635
Alignment:
Q  50 ttctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  33739674 ttctaaaaaataagtggatgtattctagcaaatgcctata 33739635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 29403983 - 29404044
Alignment:
Q  20 tttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||| |||||| ||||| | |||||||||||||||||||| |||||| || |||||    
T  29403983 tttttagttat-catttgctaaaacactcattctaaaaaataagtgggtgtattttagcaaat 29404044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 42850140 - 42850104
Alignment:
Q  53 taaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  42850140 taaaaaataagtggatgtattctagcaaatgcctata 42850104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 9955959 - 9955887
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  9955959 cactttttagttattcatttgttaaaatactctttctaaaaaataagtgggtgtattctagcaaatgcctata 9955887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 27828475 - 27828403
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||| ||||||    
T  27828475 cactttttagttattcacttgctaaaatactcattctaaaaaataagtgggtgtattctaacaaatgcctata 27828403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 5187935 - 5187868
Alignment:
Q  15 atcactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| |||||    
T  5187935 atcactttttagttattcatttgttaaaatactcaatctaaaaaataagtgggtgtattctagcaaat 5187868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 29646250 - 29646322
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  29646250 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 29646322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 31133040 - 31132968
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  31133040 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 31132968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 1370062 - 1369997
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||| ||||||||||||| |||||    
T  1370062 cactttttagttattcacttgctaaaatactccttctaaaaaataaatggatgtattctagcaaat 1369997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 4184423 - 4184351
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||| | ||||||||| ||||| ||||||    
T  4184423 cactttttagttattcacttgctaaaatactccttctaaaaaataagttggtgtattctagcaaatgcctata 4184351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 8171910 - 8171982
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||| |||||||||| ||||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  8171910 cactgtttagttatttatttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 8171982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 15962901 - 15962829
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||||||||||| || ||| ||||||| |||||||||||||||||||| |||||||||  |||| ||||||    
T  15962901 cactttttagttatacacttgctaaaatactcattctaaaaaataagtgggtgtattctagaaaatgcctata 15962829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 16599232 - 16599161
Alignment:
Q  18 actttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||||||||||||| ||| ||||||| || ||||||||||||||||| |||||||||  |||| ||||||    
T  16599232 actttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtattctagtaaatgcctata 16599161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 26668026 - 26667957
Alignment:
Q  20 tttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||| || ||  ||||||| || ||||||||||||||||| ||||||||||||||| ||||||    
T  26668026 tttttagttatacacttactaaaatactccttctaaaaaataagtgggtgtattctaacaaatgcctata 26667957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 11100544 - 11100472
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||| ||||||| ||||| ||| ||||| ||||||    
T  11100544 cactttttagttattcacttgctaaaatactccttctaaaaactaagtgggtgtatcctagcaaatgcctata 11100472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 20755519 - 20755455
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaa 81  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||||  ||||||||| ||||    
T  20755519 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgcgtgtattctagcaaa 20755455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 15718241 - 15718311
Alignment:
Q  18 actttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||||||||||  ||||||||||| |  | |||||||| |||||||||||||||||||||||| ||||||    
T  15718241 actttttagttata-atttgttaaaacacaccttctaaaatataagtggatgtattctaacaaatgcctata 15718311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 10778107 - 10778042
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||| ||| ||||||| || |||||||||  |||||| ||||| ||| |||||    
T  10778107 cactttttagttattcacttgctaaaatactccttctaaaaaccaagtgggtgtatcctagcaaat 10778042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 10315363 - 10315307
Alignment:
Q  21 ttttagttatt-catttgttaaaatattcattctaaaaaataagtggatgtattcta 76  Q
    ||||||||||| |||||| ||||||| || ||||||||||||||||  |||||||||    
T  10315363 ttttagttatttcatttgctaaaatactccttctaaaaaataagtgagtgtattcta 10315307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 14488362 - 14488402
Alignment:
Q  50 ttctaaaaaataagtggatgtattctaacaaatacctatat 90  Q
    ||||||||||||||||| ||||||||| ||||| |||||||    
T  14488362 ttctaaaaaataagtgggtgtattctagcaaatgcctatat 14488402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 7521388 - 7521460
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| |||||||||| ||||||||||||||||| ||||||||||||||| ||||||    
T  7521388 cactttttagttattcacttgctaaaatattctttctaaaaaataagtgggtgtattctaacaaatgcctata 7521460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 994886 - 994814
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  994886 cactttttagttattcatttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 994814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 38798008 - 38798080
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||||||||||| || |||||||||||||||||||||||| || ||||| ||||||    
T  38798008 cactttttagttattcacttgttaaaatactccttctaaaaaataagtggatgtattttagcaaatgcctata 38798080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 6109329 - 6109256
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctatat 90  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||| ||| ||||||||| ||||| |||||||    
T  6109329 cactttttagttattcacttgctaaaatactcattctaaaaaataaatgggtgtattctagcaaatgcctatat 6109256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 7848557 - 7848629
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  7848557 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 7848629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 995193 - 995120
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattct-aaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||||||| ||||||| || |||| ||||||||||||| ||||||||| ||||| ||||||    
T  995193 cactttttagttattcatttgctaaaatactccttctaaaaaaataagtggttgtattctagcaaatgcctata 995120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 17226339 - 17226274
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||| ||| |||||||||  ||||||||||||||||| ||||||||| |||||    
T  17226339 cactttttagttattcacttgctaaaatatttcttctaaaaaataagtgggtgtattctagcaaat 17226274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 37504571 - 37504636
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||| ||  ||||||| || ||||||||||||||||| |||||||||||||||    
T  37504571 cactttttagttattcactttctaaaatactccttctaaaaaataagtgggtgtattctaacaaat 37504636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 45059697 - 45059632
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||| ||| |||||    
T  45059697 cactttttagttattcacttgctaaaatactcattctaaaaaataagtgggtgtatcctagcaaat 45059632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 4043658 - 4043730
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||| | ||||||||| ||||| ||||||    
T  4043658 cactttttagttattcacttgctaaaatactccttctaaaaaataagttggtgtattctagcaaatgcctata 4043730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 11460180 - 11460252
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||||| || |||||| ||||| ||||||    
T  11460180 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgcattctagcaaatgcctata 11460252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 26158397 - 26158325
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||| | ||||||||| ||||| ||||||    
T  26158397 cactttttagttattcacttgctaaaatactccttctaaaaaataagtaggtgtattctagcaaatgcctata 26158325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 2868328 - 2868255
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctatat 90  Q
    ||||||||| ||||||| ||| ||||| | |||||||||||||||||||| ||||| ||| ||||| |||||||    
T  2868328 cactttttatttattcacttgctaaaacactcattctaaaaaataagtgggtgtatcctagcaaatgcctatat 2868255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 6114811 - 6114876
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||| | ||| ||||||| || ||||||||||||||||| ||||||||| |||||    
T  6114811 cactttttagttatttacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaat 6114876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 6748814 - 6748749
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||| ||| ||||||| || |||||||||| |||||| ||||||||| |||||    
T  6748814 cactttttagttattcacttgctaaaatactccttctaaaaaagaagtgggtgtattctagcaaat 6748749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 21727675 - 21727740
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||| | ||| ||||||| || ||||||||||||||||| ||||||||| |||||    
T  21727675 cactttttagttatttacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaat 21727740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 47461724 - 47461796
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||| ||||||| ||||| ||| ||||| ||||||    
T  47461724 cactttttagttattcacttgctaaaatactccttctaaaaactaagtgggtgtatcctagcaaatgcctata 47461796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 27728221 - 27728276
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtat 72  Q
    ||||||||||||||||| ||| |||||||||| ||||||||| ||||||| |||||    
T  27728221 cactttttagttattcacttgctaaaatattccttctaaaaactaagtgggtgtat 27728276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 17065759 - 17065805
Alignment:
Q  20 tttttagttattcatttgttaaaatattcattctaaaaaataagtgg 66  Q
    |||||||||||||||||| ||||||| || |||||||||||||||||    
T  17065759 tttttagttattcatttgctaaaatactccttctaaaaaataagtgg 17065805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 51952234 - 51952304
Alignment:
Q  20 tttttagttattcatttgttaaaatattcattct-aaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||||||||||| ||| ||||||| || |||| ||||||||||||| ||||||||| ||||| ||||||    
T  51952234 tttttagttattcacttgctaaaatactccttctaaaaaaataagtgggtgtattctagcaaatgcctata 51952304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 51148176 - 51148127
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtgg 66  Q
    ||||||||||||||||| ||  ||||||| ||||||||||||||||||||    
T  51148176 cactttttagttattcacttactaaaatactcattctaaaaaataagtgg 51148127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 12896667 - 12896739
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||| ||||| ||||||| ||||| ||| ||||| ||||||    
T  12896667 cactttttagttattcacttgctaaaatactccttccaaaaattaagtgggtgtatcctagcaaatgcctata 12896739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 26152362 - 26152290
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||| ||||||| |||||  || ||||| ||||||    
T  26152362 cactttttagttattcacttgctaaaatactccttctaaaaactaagtgggtgtatcttaccaaatgcctata 26152290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 27800494 - 27800548
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgta 71  Q
    ||||||||||||||||| ||| ||||||| || ||||||||| ||||||| ||||    
T  27800494 cactttttagttattcacttgctaaaatactccttctaaaaactaagtgggtgta 27800548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 1376135 - 1376094
Alignment:
Q  48 cattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||    
T  1376135 cattctaaaaaataagtggatgtatcctagcaaatgcctata 1376094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 3544318 - 3544391
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaa-aataagtggatgtattctaacaaatacctata 89  Q
    ||||||||| || |||| ||| ||||||| || |||||||| ||||||||| ||||||||| ||||| ||||||    
T  3544318 cactttttaattcttcacttgctaaaatactccttctaaaaaaataagtgggtgtattctagcaaatgcctata 3544391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 32203208 - 32203249
Alignment:
Q  48 cattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||    
T  32203208 cattctaaaaaataagtgggtgtattctagcaaatgcctata 32203249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 8815362 - 8815433
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| |||  |||||| || |||| |||||||||| | ||||||||| ||||| ||||||    
T  8815362 cactttttagttattcacttgcgaaaatactccttct-aaaaataagtaggtgtattctagcaaatgcctata 8815433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 27317699 - 27317735
Alignment:
Q  53 taaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  27317699 taaaaaataagtggatgtattctagcaaatgcctata 27317735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 34277644 - 34277589
Alignment:
Q  20 tttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattcta 76  Q
    ||||||||||| | |||| ||||||| || ||||||||||||||||| |||||||||    
T  34277644 tttttagttat-cgtttgctaaaatactccttctaaaaaataagtgggtgtattcta 34277589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 27005243 - 27005178
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||||||| |||||||||||||||    
T  27005243 cactttttagttattcatttgctaaaatactccttctaaaaaataagtgggtgtattctaacaaat 27005178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 3960801 - 3960736
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||||||| ||||||||| |||||    
T  3960801 cactttttagttattcatttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaat 3960736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 15808994 - 15809066
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||| ||||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  15808994 cactttttagttattaatttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 15809066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 30688078 - 30688006
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  30688078 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 30688006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 1797436 - 1797495
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattcta 76  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||||||    
T  1797436 cactttttagttattcacttgctaaaatactcattctaaaaaataagtgggtgtattcta 1797495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 30486133 - 30486208
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctatataa 92  Q
    ||||||||||||||||| ||| ||||||| |||||||||||| ||||||||||||| ||| ||||| |||| ||||    
T  30486133 cactttttagttattcaattgctaaaatactcattctaaaaactaagtggatgtatcctagcaaatgcctaaataa 30486208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 7014552 - 7014614
Alignment:
Q  20 tttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||| |||||    
T  7014552 tttttagttattcatttgctaaaatactcattctaaaaaataagtgggtgtgttctagcaaat 7014614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 33282280 - 33282350
Alignment:
Q  18 actttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctat 88  Q
    |||||||||||||||| ||| ||||||| |||||||||||||||||||| || |||||| ||||| |||||    
T  33282280 actttttagttattcacttgctaaaatactcattctaaaaaataagtgggtgcattctagcaaatgcctat 33282350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 1951596 - 1951524
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || || |||||||||||||| |||||||||||| || ||||||    
T  1951596 cactttttagttattcacttgctaaaatactccttttaaaaaataagtgggtgtattctaacatatgcctata 1951524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 17605064 - 17605136
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||| | ||||||||||| || ||||||||||||||||| ||||||| | ||||| ||||||    
T  17605064 cactttttagttatttacttgttaaaatactccttctaaaaaataagtgggtgtattccagcaaatgcctata 17605136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 29302264 - 29302196
Alignment:
Q  21 ttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||| ||||||||||| || |||||||||||||| || ||||||||| ||||| ||||||    
T  29302264 ttttagttattcacttgttaaaatactccttctaaaaaataagcgggtgtattctagcaaatgcctata 29302196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 33026251 - 33026323
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||| ||||| ||||||| || ||||||||||||||| | ||||||||| ||||| ||||||    
T  33026251 cactttttagttattaatttgctaaaatactccttctaaaaaataagtcggtgtattctagcaaatgcctata 33026323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 14795715 - 14795774
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattcta 76  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||||| |||||||||    
T  14795715 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtattcta 14795774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 4736818 - 4736887
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| ||   ||||||||||||||||||||||||| ||||| ||||||    
T  4736818 cactttttagttattcacttgctaaaatactc---ctaaaaaataagtggatgtattctagcaaatgcctata 4736887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 11448756 - 11448828
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||||||| |||||| ||| ||||||| || ||||||||| ||||||||||||| ||| ||||| ||||||    
T  11448756 cactttttagatattcacttgctaaaatactccttctaaaaactaagtggatgtatcctagcaaatgcctata 11448828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 26905922 - 26905991
Alignment:
Q  18 actttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||||||||||||||||| ||||||| || |   ||||||||||||| ||||||||| ||||| ||||||    
T  26905922 actttttagttattcatttgctaaaatactcct--aaaaaaataagtggctgtattctagcaaatgcctata 26905991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 17210033 - 17209967
Alignment:
Q  20 tttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||||||||| ||||| ||||||| ||   ||||||||||||||| ||||||||| ||||| ||||||    
T  17210033 tttttagttattgatttgctaaaatactc---ctaaaaaataagtgggtgtattctagcaaatgcctata 17209967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 30667743 - 30667671
Alignment:
Q  15 atcactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||| || |||| ||| ||||||| ||||||||||||||| |||  ||||||||| ||||| ||||||    
T  30667743 atcactttttaatttttcacttgctaaaatactcattctaaaaaatatgtg--tgtattctagcaaatgcctata 30667671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 12910163 - 12910113
Alignment:
Q  39 taaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||| || ||||||||||||||||||| ||||||||| ||||| ||||||    
T  12910163 taaaacatacattctaaaaaataagtgggtgtattctagcaaatgcctata 12910113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 3038937 - 3038978
Alignment:
Q  48 cattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||    
T  3038937 cattctaaaaaataagtgggtgtatcctaacaaatgcctata 3038978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 4150980 - 4151024
Alignment:
Q  15 atcactttttagttattcatttgttaaaatattcattctaaaaaa 59  Q
    ||||||||||||||||||| ||||||||||| || || |||||||    
T  4150980 atcactttttagttattcacttgttaaaatactctttttaaaaaa 4151024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 13943423 - 13943351
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||||||||| ||||||    
T  13943423 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtattctaacaaatgcctata 13943351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 27389511 - 27389583
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  27389511 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 27389583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 36817811 - 36817739
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||||||  ||||||||| ||||| ||||||    
T  36817811 cactttttagttattcacttgctaaaatactcattctaaaaaataagtgtgtgtattctagcaaattcctata 36817739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 12864316 - 12864389
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctatat 90  Q
    ||||||||||||||||| ||| ||||||| || || |||||||||||||| ||||||||| ||||| |||||||    
T  12864316 cactttttagttattcacttgctaaaatactccttttaaaaaataagtgggtgtattctagcaaatgcctatat 12864389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 16960443 - 16960370
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctatat 90  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||||  ||||||||| ||||| |||||||    
T  16960443 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgagtgtattctagcaaatgcctatat 16960370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 1805012 - 1805084
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||| ||||| ||||||| || |||||||| |||||||| ||||||||| ||||| ||||||    
T  1805012 cactttttagttattgatttgctaaaatactccttctaaaagataagtgggtgtattctagcaaatgcctata 1805084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 14387561 - 14387489
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| |||  |||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  14387561 cactttttagttattcacttgccaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 14387489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 39424429 - 39424357
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||| | ||||||||| ||||| ||||||    
T  39424429 cactttttagttattcacttgctaaaatactccttctaaaaaataagttggtgtattctagcaaatgcctata 39424357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 52772407 - 52772335
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || |||| |||||||||||| ||||||||| ||||| ||||||    
T  52772407 cactttttagttattcacttgctaaaatactccttctgaaaaataagtgggtgtattctagcaaatgcctata 52772335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 20411358 - 20411293
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||| ||| ||| ||| || ||||||||||||||||| ||||||||| |||||    
T  20411358 cactttttagttattcacttgctaagatactccttctaaaaaataagtgggtgtattctagcaaat 20411293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 47130938 - 47131011
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattct-aaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||| ||||| ||||||| || |||| ||||||||||||| ||||||||| ||||| ||||||    
T  47130938 cactttttagttattgatttgctaaaatactccttctaaaaaaataagtgggtgtattctagcaaatgcctata 47131011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 13385758 - 13385830
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||| ||||||| ||||| ||| ||||| ||||||    
T  13385758 cactttttagttattcaattgctaaaatactccttctaaaaactaagtgggtgtatcctagcaaatgcctata 13385830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 14494530 - 14494458
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||| ||||||| ||||| ||| ||||| ||||||    
T  14494530 cactttttagttattcacttgctaaaatactccttctaaaaactaagtgggtgtatcctagcaaatgcctata 14494458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 32716430 - 32716502
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||  ||||||| || |||| |||||||||||| ||||||||| ||||| ||||||    
T  32716430 cactttttagttattcacttactaaaatactccttcttaaaaataagtgggtgtattctagcaaatgcctata 32716502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 43236323 - 43236251
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||||||||||| || ||| ||||||| |  ||||||||||||||||| ||||| ||| ||||| ||||||    
T  43236323 cactttttagttatccacttgctaaaatacttcttctaaaaaataagtgggtgtatcctagcaaatgcctata 43236251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 51465049 - 51465104
Alignment:
Q  20 tttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattcta 76  Q
    |||||||||||| ||||| ||||||| || ||||||||||||||||| |||||||||    
T  51465049 tttttagttattgatttgctaaaatactccttctaaaaaataagtgg-tgtattcta 51465104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 27348284 - 27348223
Alignment:
Q  20 tttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||| |||||| ||||||| |  ||||||||||||||| | |||||||||||||||    
T  27348284 tttttagttat-catttgctaaaatacttcttctaaaaaataagttggtgtattctaacaaat 27348223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 28094455 - 28094504
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtgg 66  Q
    ||||||||||||||||||||  ||||||| || |||| ||||||||||||    
T  28094455 cactttttagttattcatttactaaaatactccttcttaaaaataagtgg 28094504  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 32374563 - 32374628
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||| ||| ||||||| || ||||| ||| ||||||| |||||  ||||||||    
T  32374563 cactttttagttattcacttgctaaaatactccttctacaaactaagtgggtgtatcgtaacaaat 32374628  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 27255813 - 27255741
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||| | ||  ||||||| || || ||||||||||| || ||||||||| ||||| ||||||    
T  27255813 cactttttagttatttacttcctaaaatactccttttaaaaaataagagggtgtattctagcaaatgcctata 27255741  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 28764709 - 28764654
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtatt 73  Q
    ||||||||||||||  | ||| ||||| | |||||||||||||||||||||||||||    
T  28764709 cactttttagttatg-acttgctaaaacaatcattctaaaaaataagtggatgtatt 28764654  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 34515256 - 34515220
Alignment:
Q  53 taaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  34515256 taaaaaataagtgggtgtattctaacaaatgcctata 34515220  T

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Target: scaffold0068 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 57932 - 58001
Alignment:
Q  20 tttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||||||||||||||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  57932 tttttagttattcatttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 58001  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 14826325 - 14826390
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||||||| ||||||||| |||||    
T  14826325 cactttttagttattcacttgcaaaaatattcattctaaaaaataagtgggtgtattctagcaaat 14826390  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 19971468 - 19971537
Alignment:
Q  20 tttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||||||||||||||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  19971468 tttttagttattcatttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 19971537  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 21021345 - 21021276
Alignment:
Q  20 tttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||||||||||||||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  21021345 tttttagttattcatttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 21021276  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 9483812 - 9483740
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  9483812 cactttttagttattcacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 9483740  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 25281113 - 25281054
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattcta 76  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||||| |||||||||    
T  25281113 cactttttagttatttatttgctaaaatactcattctaaaaaataagtgggtgtattcta 25281054  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 1783165 - 1783093
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||| | || ||||||||||||||||| ||||||||| ||||| ||||||    
T  1783165 cactttttagttattcacttgctaaaacactccttctaaaaaataagtgggtgtattctagcaaatgcctata 1783093  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 31071716 - 31071644
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||| ||||| ||||||| || ||||||||||||||| | ||||||||| ||||| ||||||    
T  31071716 cactttttagttattgatttgctaaaatactccttctaaaaaataagttggtgtattctagcaaatgcctata 31071644  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 18804950 - 18804887
Alignment:
Q  18 actttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||| |||||||||||||| || |||||||||||| |||| | |||||||||||||    
T  18804950 actttttagttat-catttgttaaaatagtccttctaaaaaatatgtgggtttattctaacaaat 18804887  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 21442291 - 21442220
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||| ||| ||||||| || |||||||||| |||||| ||||||||| ||||| ||||||    
T  21442291 cactttttagttattcacttgctaaaatactccttctaaaaaacaagtgg-tgtattctagcaaatgcctata 21442220  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 30578032 - 30577960
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||||||||||||||  || ||||||| ||||||||||||||||| || ||||| ||| ||||| ||||||    
T  30578032 cactttttagttattcacctgctaaaatactcattctaaaaaataagcgggtgtatcctagcaaatgcctata 30577960  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 41943019 - 41942960
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattcta 76  Q
    ||||||||||||||||| ||| ||||||| || | ||||||||||||||| |||||||||    
T  41943019 cactttttagttattcacttgctaaaatactcctcctaaaaaataagtgggtgtattcta 41942960  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 17884083 - 17884037
Alignment:
Q  36 tgttaaaatattcattctaaaaaataagtggatgtattctaacaaat 82  Q
    |||||||| | ||||||||||||||||||||||||||| ||||||||    
T  17884083 tgttaaaacactcattctaaaaaataagtggatgtattttaacaaat 17884037  T

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Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 21442395 - 21442456
Alignment:
Q  28 tattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    |||||| ||| ||||||| || ||||||||||||||||| ||||||||| ||||| ||||||    
T  21442395 tattcacttgctaaaatactccttctaaaaaataagtgggtgtattctagcaaatgcctata 21442456  T

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Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 42556497 - 42556441
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtatt 73  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||||||| | ||||||    
T  42556497 cactttttagttattcacttgctaaaatactccttctaaaaaataagtaggtgtatt 42556441  T

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Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 89
Target Start/End: Original strand, 1281950 - 1281989
Alignment:
Q  50 ttctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  1281950 ttctaaaaaataagtggatgtattctaccaaatgcctata 1281989  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 2178740 - 2178780
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaa 57  Q
    ||||||||||||||||||||| ||||||| || ||||||||    
T  2178740 cactttttagttattcatttgctaaaatactccttctaaaa 2178780  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 13290626 - 13290594
Alignment:
Q  50 ttctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||| |||||||||||||||||||||||    
T  13290626 ttctaaaaattaagtggatgtattctaacaaat 13290594  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 23544858 - 23544890
Alignment:
Q  50 ttctaaaaaataagtggatgtattctaacaaat 82  Q
    ||||||||||||||||| |||||||||||||||    
T  23544858 ttctaaaaaataagtgggtgtattctaacaaat 23544890  T

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Target: scaffold0074 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 26215 - 26143
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||| ||||| ||||||| ||||||||||| |||||||| ||||||||| ||||| ||||||    
T  26215 cactttttagttatttatttgctaaaatactcattctaaaatataagtgggtgtattctagcaaatgcctata 26143  T

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Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 452529 - 452457
Alignment:
Q  17 cactttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||||||  | ||| ||||||| || ||||||||||||||||| ||||||||||||||| ||||||    
T  452529 cactttttagttatatacttgctaaaatactccttctaaaaaataagtgggtgtattctaacaaatgcctata 452457  T

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Target: scaffold0119 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 2767 - 2836
Alignment:
Q  20 tttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||| || ||  ||||||| || ||||||||||||||||| ||||||||||||||| ||||||    
T  2767 tttttagttatacacttactaaaatactccttctaaaaaataagtgggtgtattctaacaaatgcctata 2836  T

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Target: scaffold0119; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 14822 - 14891
Alignment:
Q  20 tttttagttattcatttgttaaaatattcattctaaaaaataagtggatgtattctaacaaatacctata 89  Q
    ||||||||||| || ||  ||||||| || ||||||||||||||||| ||||||||||||||| ||||||    
T  14822 tttttagttatacacttactaaaatactccttctaaaaaataagtgggtgtattctaacaaatgcctata 14891  T

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