View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4366_low_6 (Length: 227)

Name: NF4366_low_6
Description: NF4366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4366_low_6
NF4366_low_6
[»] chr2 (7 HSPs)
chr2 (1-217)||(2326849-2327064)
chr2 (5-217)||(2330564-2330775)
chr2 (1-218)||(2350869-2351085)
chr2 (2-216)||(2303295-2303508)
chr2 (1-216)||(2293682-2293896)
chr2 (5-216)||(2320996-2321206)
chr2 (1-216)||(2310013-2310227)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 2327064 - 2326849
Alignment:
Q  1 cacacacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctttacaacaccatcaccacccatgacctccctaatctcctgcaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  2327064 cacacacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctctacaacaccatcaccacccatgaactccctaatctcctgcaca 2326965  T
Q  101 agcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaagaactccgaacaa 200  Q
    ||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2326964 agcctcctttgaacgtccgggtacttc-accaaattcgccataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaaaaactccgaacaa 2326866  T
Q  201 agactaaccatttcatc 217  Q
    |||||||||||||||||    
T  2326865 agactaaccatttcatc 2326849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 5 - 217
Target Start/End: Complemental strand, 2330775 - 2330564
Alignment:
Q  5 cacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctttacaacaccatcaccacccatgacctccctaatctcctgcacaagcc 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | || || |||| |||||||| |||||  ||||||||| |||||||     
T  2330775 cacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctctccagcatcatcgccacccatcacctctgtaatctcctccacaagct 2330676  T
Q  105 tcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaagaactccgaacaaagac 204  Q
    |||  |||||||||||||||||| | |||||| ||||||||||| ||||||||||||||||||||||| || ||| | ||||| ||||||||||||||||    
T  2330675 tcccctgaacgtccgggtacttc-accaaattcgccataatccattgcaaagcggtggaagtagtatccgtgccaccgttcaaaaactccgaacaaagac 2330577  T
Q  205 taaccatttcatc 217  Q
    ||| |||||||||    
T  2330576 taatcatttcatc 2330564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 2351085 - 2350869
Alignment:
Q  1 cacacacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctttacaacaccatcaccacccatgacctccctaatctcctgcaca 100  Q
    |||||| |||| ||||  |||||| ||||| |||||||||||||||||| |||||| | ||   ||||||| |||||| |||||||||||||| | ||||    
T  2351085 cacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctccatttccatcacgacccatcacctccctaatctcgtccaca 2350986  T
Q  101 agcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaagaactccgaacaa 200  Q
    ||||||| ||| ||||| ||||||||||  |||||||||||||||||| |||||||| ||||||||||||||| | ||||||||||| ||||| ||||||    
T  2350985 agcctcccttgcacgtcggggtacttcac-caaatttgccataatccattgcaaagccgtggaagtagtatctatcccagcattcaaaaactctgaacaa 2350887  T
Q  201 agactaaccatttcatct 218  Q
    ||||||||||||||||||    
T  2350886 agactaaccatttcatct 2350869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 2303508 - 2303295
Alignment:
Q  2 acacacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctttacaacaccatcaccacccatgacctccctaatctcctgcacaa 101  Q
    ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| | ||    ||||||||||||| ||||||| |||||||| |||||    
T  2303508 acacatttcaaataccgaagtttctgcaattcttcctctttcacttcctccttctctccattctcatcaccacccatcacctcccgaatctcctccacaa 2303409  T
Q  102 gcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaagaactccgaacaaa 201  Q
    ||||||| || || || |||||||| || |||||| ||||||||||| |||||||  |||||||||||||| || ||| ||||||  ||||| |||||||    
T  2303408 gcctcctctgcacttctgggtactt-aaccaaattcgccataatccattgcaaagtagtggaagtagtatccgtcccaccattcagaaactctgaacaaa 2303310  T
Q  202 gactaaccatttcat 216  Q
    || ||||||||||||    
T  2303309 gattaaccatttcat 2303295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 2293896 - 2293682
Alignment:
Q  1 cacacacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctttacaacaccatcaccacccatgacctccctaatctcctgcaca 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||    ||||||||||||| ||||||| |||||||| ||||    
T  2293896 cacacacttcaaataccgaagtttctgcaagtcttcctctttcacttcctccttctctccattttcatcaccacccatcacctcccgaatctcctccaca 2293797  T
Q  101 agcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaagaactccgaacaa 200  Q
    |||||||  || || || |||||||||| | | ||| ||||||||||| ||||||   ||||||||||| ||||| ||| | ||||| ||||| ||||||    
T  2293796 agcctcccctgcacttctgggtacttcact-acattcgccataatccactgcaaactagtggaagtagtgtctgtcccaccgttcaaaaactctgaacaa 2293698  T
Q  201 agactaaccatttcat 216  Q
    ||| ||||||||||||    
T  2293697 agattaaccatttcat 2293682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 2321206 - 2320996
Alignment:
Q  5 cacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctttacaacaccatcaccacccatgacctccctaatctcctgcacaagcc 104  Q
    ||||||||||| |||||||| ||||||| ||||||||||||||||||||||| | ||    |||||| | |||| ||||| | |||||||| ||||||||    
T  2321206 cacttcaaatatcgaagtttctgcaagttttcctctttcacttcctccttctctccattgtcatcactaaccatcacctcacgaatctcctccacaagcc 2321107  T
Q  105 tcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaagaactccgaacaaagac 204  Q
    |||  || || |||||||||||||  |||||| ||||||||||| |||||||| |||||||||||||| || ||| | ||||| |||||||||||||||     
T  2321106 tcccctgcacttccgggtacttcac-caaattcgccataatccactgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagat 2321008  T
Q  205 taaccatttcat 216  Q
    ||||||||||||    
T  2321007 taaccatttcat 2320996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 2310227 - 2310013
Alignment:
Q  1 cacacacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctttacaacaccatcaccacccatgacctccctaatctcctgcaca 100  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | ||    ||||||||||||| ||||||| |||||||| ||||    
T  2310227 cacacacttcaaataccaaagtttctgcaagtcttcctctttcacttcctccttctctccattttcatcaccacccatcacctcccgaatctcctccaca 2310128  T
Q  101 agcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaagaactccgaacaa 200  Q
    |||||||  |  || || ||||||||| | || ||| ||||||||||| | ||||   ||||||||||| ||||| ||| | ||||| ||||| ||||||    
T  2310127 agcctccccttcacttctgggtacttc-accacattcgccataatccactccaaactagtggaagtagtgtctgtcccaccgttcaaaaactctgaacaa 2310029  T
Q  201 agactaaccatttcat 216  Q
    ||| ||||||||||||    
T  2310028 agattaaccatttcat 2310013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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