View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4367-Insertion-3 (Length: 658)

Name: NF4367-Insertion-3
Description: NF4367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4367-Insertion-3
NF4367-Insertion-3
[»] chr7 (9 HSPs)
chr7 (364-400)||(48683991-48684027)
chr7 (369-400)||(724755-724786)
chr7 (369-400)||(9662818-9662849)
chr7 (369-400)||(18994188-18994219)
chr7 (369-400)||(33245861-33245892)
chr7 (369-400)||(40014909-40014940)
chr7 (369-400)||(44458525-44458556)
chr7 (369-400)||(44883473-44883504)
chr7 (369-400)||(46554719-46554750)
[»] chr8 (8 HSPs)
chr8 (369-400)||(277507-277538)
chr8 (369-400)||(638311-638342)
chr8 (369-400)||(824117-824148)
chr8 (369-400)||(15882701-15882732)
chr8 (369-400)||(23346430-23346461)
chr8 (369-400)||(26950113-26950144)
chr8 (369-400)||(36192202-36192233)
chr8 (369-400)||(38060508-38060539)
[»] chr6 (3 HSPs)
chr6 (369-400)||(16918883-16918914)
chr6 (364-400)||(11153941-11153977)
chr6 (372-400)||(28579313-28579341)
[»] chr5 (6 HSPs)
chr5 (369-400)||(744862-744893)
chr5 (369-400)||(12500125-12500156)
chr5 (369-400)||(15421068-15421099)
chr5 (369-400)||(19665678-19665709)
chr5 (369-400)||(30130213-30130244)
chr5 (369-400)||(39589157-39589188)
[»] chr4 (10 HSPs)
chr4 (369-400)||(4653705-4653736)
chr4 (369-400)||(13533842-13533873)
chr4 (369-400)||(16665393-16665424)
chr4 (369-400)||(17361835-17361866)
chr4 (369-400)||(20342623-20342654)
chr4 (369-400)||(23418586-23418617)
chr4 (369-400)||(41040828-41040859)
chr4 (369-400)||(52448122-52448153)
chr4 (369-400)||(54920132-54920163)
chr4 (371-400)||(7487999-7488028)
[»] chr3 (11 HSPs)
chr3 (369-400)||(4232344-4232375)
chr3 (369-400)||(23020537-23020568)
chr3 (369-400)||(27126928-27126959)
chr3 (369-400)||(27324952-27324983)
chr3 (369-400)||(27331189-27331220)
chr3 (369-400)||(38697603-38697634)
chr3 (369-400)||(41697362-41697393)
chr3 (369-400)||(45170741-45170772)
chr3 (369-400)||(50610189-50610220)
chr3 (364-400)||(2218741-2218777)
chr3 (364-400)||(40906888-40906924)
[»] chr2 (4 HSPs)
chr2 (369-400)||(2291566-2291597)
chr2 (369-400)||(3906177-3906208)
chr2 (369-400)||(38281534-38281565)
chr2 (369-398)||(37724778-37724807)
[»] chr1 (6 HSPs)
chr1 (369-400)||(7153647-7153678)
chr1 (369-400)||(10773458-10773489)
chr1 (369-400)||(33705327-33705358)
chr1 (369-400)||(36308569-36308600)
chr1 (369-400)||(36731398-36731429)
chr1 (369-400)||(44511680-44511711)


Alignment Details
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 364 - 400
Target Start/End: Complemental strand, 48684027 - 48683991
Alignment:
Q  364 taatgttgtcgttcccaactgccgcatttttcaattt 400  Q
    |||| ||||||||||||||||||||||||||||||||    
T  48684027 taattttgtcgttcccaactgccgcatttttcaattt 48683991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 724755 - 724786
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  724755 ttgtcgttcccaactgccgcatttttcaattt 724786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 9662818 - 9662849
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  9662818 ttgtcgttcccaactgccgcatttttcaattt 9662849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 18994188 - 18994219
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  18994188 ttgtcgttcccaactgccgcatttttcaattt 18994219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 33245861 - 33245892
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  33245861 ttgtcgttcccaactgccgcatttttcaattt 33245892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 40014909 - 40014940
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  40014909 ttgtcgttcccaactgccgcatttttcaattt 40014940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 44458525 - 44458556
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  44458525 ttgtcgttcccaactgccgcatttttcaattt 44458556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 44883504 - 44883473
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  44883504 ttgtcgttcccaactgccgcatttttcaattt 44883473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 46554719 - 46554750
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  46554719 ttgtcgttcccaactgccgcatttttcaattt 46554750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 277538 - 277507
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  277538 ttgtcgttcccaactgccgcatttttcaattt 277507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 638311 - 638342
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  638311 ttgtcgttcccaactgccgcatttttcaattt 638342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 824117 - 824148
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  824117 ttgtcgttcccaactgccgcatttttcaattt 824148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 15882701 - 15882732
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  15882701 ttgtcgttcccaactgccgcatttttcaattt 15882732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 23346430 - 23346461
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  23346430 ttgtcgttcccaactgccgcatttttcaattt 23346461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 26950113 - 26950144
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  26950113 ttgtcgttcccaactgccgcatttttcaattt 26950144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 36192233 - 36192202
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  36192233 ttgtcgttcccaactgccgcatttttcaattt 36192202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 38060508 - 38060539
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  38060508 ttgtcgttcccaactgccgcatttttcaattt 38060539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 16918914 - 16918883
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  16918914 ttgtcgttcccaactgccgcatttttcaattt 16918883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 364 - 400
Target Start/End: Original strand, 11153941 - 11153977
Alignment:
Q  364 taatgttgtcgttcccaactgccgcatttttcaattt 400  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  11153941 taattttgtcgttcccaactgccgcacttttcaattt 11153977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 372 - 400
Target Start/End: Complemental strand, 28579341 - 28579313
Alignment:
Q  372 tcgttcccaactgccgcatttttcaattt 400  Q
    |||||||||||||||||||||||||||||    
T  28579341 tcgttcccaactgccgcatttttcaattt 28579313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 744862 - 744893
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  744862 ttgtcgttcccaactgccgcatttttcaattt 744893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 12500156 - 12500125
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  12500156 ttgtcgttcccaactgccgcatttttcaattt 12500125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 15421099 - 15421068
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  15421099 ttgtcgttcccaactgccgcatttttcaattt 15421068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 19665709 - 19665678
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  19665709 ttgtcgttcccaactgccgcatttttcaattt 19665678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 30130213 - 30130244
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  30130213 ttgtcgttcccaactgccgcatttttcaattt 30130244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 39589188 - 39589157
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  39589188 ttgtcgttcccaactgccgcatttttcaattt 39589157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 4653736 - 4653705
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  4653736 ttgtcgttcccaactgccgcatttttcaattt 4653705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 13533842 - 13533873
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  13533842 ttgtcgttcccaactgccgcatttttcaattt 13533873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 16665424 - 16665393
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  16665424 ttgtcgttcccaactgccgcatttttcaattt 16665393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 17361866 - 17361835
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  17361866 ttgtcgttcccaactgccgcatttttcaattt 17361835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 20342623 - 20342654
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  20342623 ttgtcgttcccaactgccgcatttttcaattt 20342654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 23418586 - 23418617
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  23418586 ttgtcgttcccaactgccgcatttttcaattt 23418617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 41040828 - 41040859
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  41040828 ttgtcgttcccaactgccgcatttttcaattt 41040859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 52448153 - 52448122
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  52448153 ttgtcgttcccaactgccgcatttttcaattt 52448122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 54920163 - 54920132
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  54920163 ttgtcgttcccaactgccgcatttttcaattt 54920132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 400
Target Start/End: Complemental strand, 7488028 - 7487999
Alignment:
Q  371 gtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||    
T  7488028 gtcgttcccaactgccgcatttttcaattt 7487999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 4232344 - 4232375
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  4232344 ttgtcgttcccaactgccgcatttttcaattt 4232375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 23020568 - 23020537
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  23020568 ttgtcgttcccaactgccgcatttttcaattt 23020537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 27126959 - 27126928
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  27126959 ttgtcgttcccaactgccgcatttttcaattt 27126928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 27324952 - 27324983
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  27324952 ttgtcgttcccaactgccgcatttttcaattt 27324983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 27331189 - 27331220
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  27331189 ttgtcgttcccaactgccgcatttttcaattt 27331220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 38697634 - 38697603
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  38697634 ttgtcgttcccaactgccgcatttttcaattt 38697603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 41697362 - 41697393
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  41697362 ttgtcgttcccaactgccgcatttttcaattt 41697393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 45170772 - 45170741
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  45170772 ttgtcgttcccaactgccgcatttttcaattt 45170741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 50610220 - 50610189
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  50610220 ttgtcgttcccaactgccgcatttttcaattt 50610189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 364 - 400
Target Start/End: Complemental strand, 2218777 - 2218741
Alignment:
Q  364 taatgttgtcgttcccaactgccgcatttttcaattt 400  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  2218777 taattttgtcgttccctactgccgcatttttcaattt 2218741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 364 - 400
Target Start/End: Complemental strand, 40906924 - 40906888
Alignment:
Q  364 taatgttgtcgttcccaactgccgcatttttcaattt 400  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  40906924 taattttgtcattcccaactgccgcatttttcaattt 40906888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 2291566 - 2291597
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  2291566 ttgtcgttcccaactgccgcatttttcaattt 2291597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 3906177 - 3906208
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  3906177 ttgtcgttcccaactgccgcatttttcaattt 3906208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 38281534 - 38281565
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  38281534 ttgtcgttcccaactgccgcatttttcaattt 38281565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 398
Target Start/End: Original strand, 37724778 - 37724807
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaat 398  Q
    ||||||||||||||||||||||||||||||    
T  37724778 ttgtcgttcccaactgccgcatttttcaat 37724807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 7153678 - 7153647
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  7153678 ttgtcgttcccaactgccgcatttttcaattt 7153647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 10773489 - 10773458
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  10773489 ttgtcgttcccaactgccgcatttttcaattt 10773458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 33705358 - 33705327
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  33705358 ttgtcgttcccaactgccgcatttttcaattt 33705327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 36308600 - 36308569
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  36308600 ttgtcgttcccaactgccgcatttttcaattt 36308569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 36731429 - 36731398
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  36731429 ttgtcgttcccaactgccgcatttttcaattt 36731398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 44511680 - 44511711
Alignment:
Q  369 ttgtcgttcccaactgccgcatttttcaattt 400  Q
    ||||||||||||||||||||||||||||||||    
T  44511680 ttgtcgttcccaactgccgcatttttcaattt 44511711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University