View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4367-Insertion-5 (Length: 313)
Name: NF4367-Insertion-5
Description: NF4367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4367-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 838515 - 838435
Alignment:
| Q |
227 |
tttgaatggaaacaaaccaaacaagtcctatttgtggttagtgtcaagtcaaacaaaaacacaacttatccaaggttctcac |
308 |
Q |
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| T |
838515 |
tttgaatggaaacaa-ccaaacaagtcctatttgtggttagtgtcaagtcaaacaaaaacacaacttatccaaggttctcac |
838435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 838587 - 838514
Alignment:
| Q |
130 |
acaccattactatggtaaaataaagtaaaaacaatcaaaattagtgtcctaatttcctaatcactgcatttgtt |
203 |
Q |
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| T |
838587 |
acaccattactatggtaaaataaagtaaaaacaatcaaaattagtgtcctaatttcctaatcactgcatttgtt |
838514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 838644 - 838603
Alignment:
| Q |
7 |
agagaaactccgataactaattttaattaaatttatccaaga |
48 |
Q |
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| T |
838644 |
agagaaactccgataactaattttaattaaatttatccaaga |
838603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 8443453 - 8443508
Alignment:
| Q |
18 |
gataactaattttaattaaatttatccaagactcttgaactccaaactccttcatc |
73 |
Q |
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| T |
8443453 |
gataactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatc |
8443508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 6392893 - 6392841
Alignment:
| Q |
20 |
taactaattttaattaaatttatccaagactcttgaactccaaactccttcat |
72 |
Q |
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| T |
6392893 |
taactaattttaaataattgaatccaagactcgtgaactccaaaatccttcat |
6392841 |
T |
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Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 25377156 - 25377085
Alignment:
| Q |
7 |
agagaaactccgataactaattttaattaaatttatccaagactcttgaactccaaactccttcatcatcca |
78 |
Q |
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| T |
25377156 |
agagaaactccgataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatcatcca |
25377085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 33576217 - 33576181
Alignment:
| Q |
42 |
tccaagactcttgaactccaaactccttcatcatcca |
78 |
Q |
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| T |
33576217 |
tccaagactcttgaactccaaactccttcatcatcca |
33576181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 5979074 - 5979042
Alignment:
| Q |
42 |
tccaagactcttgaactccaaactccttcatca |
74 |
Q |
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| T |
5979074 |
tccaagactcttggactccaaactccttcatca |
5979042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 50645485 - 50645538
Alignment:
| Q |
19 |
ataactaattttaattaaatttatccaagactcttgaactccaaactccttcat |
72 |
Q |
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| T |
50645485 |
ataactaattttaaataattgaatccaagactcttgaactccaaaatccttcat |
50645538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 73
Target Start/End: Complemental strand, 23086829 - 23086798
Alignment:
| Q |
42 |
tccaagactcttgaactccaaactccttcatc |
73 |
Q |
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| T |
23086829 |
tccaagactcttgaactccaaactccttcatc |
23086798 |
T |
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