View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4367_high_6 (Length: 230)
Name: NF4367_high_6
Description: NF4367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4367_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 24 - 212
Target Start/End: Original strand, 4883653 - 4883841
Alignment:
| Q |
24 |
atattattctgattagagaaatattaatgcataagggagagccaaaccatataatatttgtgtagaccaaatacaatcttctgattagagaaatttttct |
123 |
Q |
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| T |
4883653 |
atattattctgattagagaaatattaatgcagaagggagagccaaaccatataatatttgagtagaccaaatacaatcttctgattagagaaatttttct |
4883752 |
T |
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| Q |
124 |
agaaatccaatcaataaaggatatattattttgtgtattaatcctaacaatattctatggaatttgaaaacaaggcaaagctatactag |
212 |
Q |
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| T |
4883753 |
agacatccaatcaataaaggatatattattccttgtattagtcctaaaaatattctatggaacttgaaaacaagagaaatctatactag |
4883841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 23 - 213
Target Start/End: Original strand, 4924172 - 4924363
Alignment:
| Q |
23 |
tatattattctgattagagaaatattaatgcataagggagagccaaaccatataatatttgtgtagaccaa-atacaatcttctgattagagaaattttt |
121 |
Q |
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| T |
4924172 |
tatattattctgattagagaaat--taatgcataagggagagccaaaccatataatatttgtgcagaccaatatacaatcttctgattagagaaatttt- |
4924268 |
T |
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| Q |
122 |
ctagaaatccaatcaat---aaaggatatattattttgtgtattaatcctaacaatattctatggaatttgaaaacaaggcaaagctatactagt |
213 |
Q |
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| T |
4924269 |
ctagacatccaatcaattataaaggatatattatttcgtgtattaatcctaacaatattctatggaacttgaaaacaagccaaagctatactagt |
4924363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 4904859 - 4905015
Alignment:
| Q |
23 |
tatattattctgattagagaaatattaatgcataagggagagccaaaccatataatatttgtgtagaccaa-atacaatcttctgattagagaaattttt |
121 |
Q |
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| T |
4904859 |
tatattattctgattagagaaat--taatgcataagggagagccaaaccatataatatttgtgcagaccaatatacaatcttctgattagagaaa-tttt |
4904955 |
T |
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| Q |
122 |
ctagaaatccaatca---ataaaggatatattattttgtgtattaatcctaacaatattc |
178 |
Q |
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| T |
4904956 |
ctagacatccaatcaattataaaggatatattatttcgtgtattaatcctaacaatattc |
4905015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 46 - 153
Target Start/End: Complemental strand, 4646631 - 4646524
Alignment:
| Q |
46 |
attaatgcataagggagagccaaaccatataatatttgtgtagaccaaat-acaatcttctgattagagaaatttttctagaaatccaatcaataaagga |
144 |
Q |
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| T |
4646631 |
attaaagcacaagggagcgccaaaccatatcatatttgtgcagaccgatttacaatcttctgattagagaaa-ttttccagacatccaatcaaaaaagga |
4646533 |
T |
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| Q |
145 |
tatattatt |
153 |
Q |
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||||||||| |
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| T |
4646532 |
tatattatt |
4646524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 4905025 - 4905074
Alignment:
| Q |
163 |
aatcctaacaatattctatggaatttgaaaacaaggcaaagctatactag |
212 |
Q |
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| T |
4905025 |
aatcctaacaatattctatggaacttgaaaacaagccaaagctatactag |
4905074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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