View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4367_low_2 (Length: 392)
Name: NF4367_low_2
Description: NF4367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4367_low_2 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 12 - 392
Target Start/End: Original strand, 6261607 - 6261987
Alignment:
| Q |
12 |
gagatgaagattggcgtgggaggtggagggtgggtgcaggaagctgtgaggtcttgtatggaggaagatgagaattgggttgagggtaattatgggaatt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6261607 |
gagatgaagattggcgtgggaggtggagggtgggtgcaggaagctgtgaggtcttgtatggaggaagatgagaattgggttgagggtaattatgggaatt |
6261706 |
T |
|
| Q |
112 |
tgagtttgagtgttggtttggatttggggaagaagaaagttaaggagatggttatgggaagagaggatttatgggttgttggtattcatgggattggtgg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6261707 |
tgagtttgagtgttggtttggatttggggaagaagaaagttaaggagatggttatgggaagagaggatttatgggttgttggtattcatgggattggtgg |
6261806 |
T |
|
| Q |
212 |
atctgggaaaacaactcttgttaaagagatttgtaaagatgaacaagtgagatgtaagtgatgatctattccacttcattaagaacttatttgaaatcac |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6261807 |
atctgggaaaacaactcttgttaaagagatttgtaaagatgaacaagtgagatgtaagtgatgatctattccacttcattaagaacttgtttgaaatcac |
6261906 |
T |
|
| Q |
312 |
cgtgaatttgacataatcacgatgacactgattttgagtgacaccgtaattctgtcaaactcgccgtcaattcaaacatgc |
392 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6261907 |
tgtgattttgacataatcacgatgacactgattttgagtgacatcgtgattctgtcaaactcgccgtcaattcaaacatgc |
6261987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 92 - 282
Target Start/End: Original strand, 6270699 - 6270889
Alignment:
| Q |
92 |
tgagggtaattatgggaatttgagtttgagtgttggtttggatttggggaagaagaaagttaaggagatggttatgggaagagaggatttatgggttgtt |
191 |
Q |
| |
|
|||||||| || ||||||||| ||||||| |||||||||| || |||||||| || |||| ||| |||||| | ||||| | ||||| || ||||| |
|
|
| T |
6270699 |
tgagggtagtttggggaatttggatttgagttttggtttggagtttgggaagaataaggttatggaaatggttgttggaaggaaagatttttgtcttgtt |
6270798 |
T |
|
| Q |
192 |
ggtattcatgggattggtggatctgggaaaacaactcttgttaaagagatttgtaaagatgaacaagtgagatgtaagtgatgatctattc |
282 |
Q |
| |
|
|| ||| |||||||||||||||||||||||| ||||||| | ||||||||||| |||||||||||||||| ||||||||| |||||||| |
|
|
| T |
6270799 |
ggaatttctgggattggtggatctgggaaaactactcttgccagagagatttgtagagatgaacaagtgagaggtaagtgataatctattc |
6270889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 360 - 392
Target Start/End: Complemental strand, 17240728 - 17240696
Alignment:
| Q |
360 |
attctgtcaaactcgccgtcaattcaaacatgc |
392 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
17240728 |
attctgtcaaactcaccgtcaattcaaacatgc |
17240696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University