View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4367_low_3 (Length: 305)
Name: NF4367_low_3
Description: NF4367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4367_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 116 - 294
Target Start/End: Complemental strand, 4881482 - 4881306
Alignment:
| Q |
116 |
aatgtaagttcaccacatagaaagtctctcttgcatttaatataacctctactttttctgtacttattttttgggaggaatctaacctctactttgtctc |
215 |
Q |
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| T |
4881482 |
aatgtaagttcaccacataaaaagtctctcttgcactgaatataacctctactttttctgctctt--tttttgggaggaatctaacctctactttgtccc |
4881385 |
T |
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| Q |
216 |
gtaaaaattattttattgtagtttgataaaacttttacacatgatcaggatagacttcatatatattttgtatgatgat |
294 |
Q |
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| T |
4881384 |
gtaaaaattattttattgtagtttgataaaacttttacacatgatcaggatagacttcatatatattttgtatgatgat |
4881306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 4881778 - 4881665
Alignment:
| Q |
6 |
tatcctttattgattggatgattcatagtctagaaaatcttagaaatgaaaccctaaatattatagccactataacgtatgaaatctggacagcaagaaa |
105 |
Q |
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| T |
4881778 |
tatcctttattgattggatgattcatagtctagaaaatcttggaaatgaaaccctaaatattatagccgctataacgtatgaaatctggacagcaagaaa |
4881679 |
T |
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| Q |
106 |
caaatcaaacaatg |
119 |
Q |
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| T |
4881678 |
caaatcaaacaatg |
4881665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 116 - 299
Target Start/End: Complemental strand, 4904557 - 4904372
Alignment:
| Q |
116 |
aatgtaagttcaccacatagaaagtctctcttgcatttaatata----acctctactttttctgtacttattttttgggaggaatctaacctctactttg |
211 |
Q |
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| T |
4904557 |
aatgtaagtttaccacataggaagtctcttttgcactaaatatatataacctctactttttctgttatt-ttttttgggaggaatctaacctgtactttg |
4904459 |
T |
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| Q |
212 |
tctcgtaaaaattattttattgtagtttgataaaacttttacacatgatcaggatagacttcatatatattttgtatgatgatgtcca |
299 |
Q |
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| T |
4904458 |
tcccgtaaaaattattttattgttgtttgataaaacttttacacatgatcaagatagacttcatttata-tttgtatgatgatttcca |
4904372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 155 - 299
Target Start/End: Complemental strand, 4924009 - 4923865
Alignment:
| Q |
155 |
atataacctctactttttctgt-acttattttttgggaggaatctaacctctactttgtctcgtaaaaattattttattgtagtttgataaaacttttac |
253 |
Q |
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| T |
4924009 |
atataacctctattttttctgttattttttttttgggaggaatctaacctgtactttgtcccgtaaaaattattttattgttgtttgataaaacttttac |
4923910 |
T |
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| Q |
254 |
acatgatcaggatagacttcatatatattttgtatgatgatgtcca |
299 |
Q |
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| T |
4923909 |
acatgatcaagatagacttcatatata-tttgtatgatgatttcca |
4923865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 4904865 - 4904743
Alignment:
| Q |
1 |
taatatatcctttattgattggatgattcatagtctagaaaatcttagaaatgaaaccctaaatattatagccactataacgtatgaaatctgg----ac |
96 |
Q |
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| T |
4904865 |
taatatatcctttattgattggatgattaatagtctagaaaatcttagaaatgaaaccctaaatattatagccgctataacgtatgaaatctggatatat |
4904766 |
T |
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| Q |
97 |
agcaagaaacaaatcaaacaatg |
119 |
Q |
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| T |
4904765 |
agcaagaaacaaatcaaacaatg |
4904743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 4924178 - 4924056
Alignment:
| Q |
1 |
taatatatcctttattgattggatgattcatagtctagaaaatcttagaaatgaaaccctaaatattatagccactataacgtatgaaatctgg----ac |
96 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
4924178 |
taatatatcctttattgattggatgattgatagtctagaaaatcttagaaatgaaaccctaaatattatagccgctataacgtatgaaatctggatatat |
4924079 |
T |
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| Q |
97 |
agcaagaaacaaatcaaacaatg |
119 |
Q |
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| T |
4924078 |
agcaagaaacaaatcaaacaatg |
4924056 |
T |
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