View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4367_low_4 (Length: 288)
Name: NF4367_low_4
Description: NF4367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4367_low_4 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0635 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 51840371 - 51840640
Alignment:
| Q |
19 |
cctccttccgagcaaaaagcctcttccacctccattcttcatcctcaacccctcattctaatctcctcttctcaatgactgtaatattagaatcaacatg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
51840371 |
cctccttccgagcaaaaagcctcttccacctccattcttcaccctcaacccctcattctaatctcctcttctcaatgacggtaatattagaatcaacatg |
51840470 |
T |
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| Q |
119 |
caaataaaaaatccgactaaatctatcacgtaacaaacccccttccaaccaaggatcattctaagaagagaaactttcaccattacataggcgacaaccc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51840471 |
caaataaaaaatccgactaaatctatcacgtaacaaacccccttccaaccaaggatcattctaagaagagaaactttcaccattacataggcgacaaccc |
51840570 |
T |
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| Q |
219 |
aaactaacctcaaatcaacctctctcccgcacacctactccctatctaactccagaataatctacccacc |
288 |
Q |
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| T |
51840571 |
aaactaacctcaaatcaacctctctcccgcacacctactccctatctaactccagataaatctatccacc |
51840640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0635 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0635
Description:
Target: scaffold0635; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 261
Target Start/End: Original strand, 1306 - 1413
Alignment:
| Q |
154 |
aacccccttccaaccaaggatcattctaagaagagaaactttcaccattacataggcgacaacccaaactaacctcaaatcaacctctctcccgcacacc |
253 |
Q |
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| T |
1306 |
aacccccttccagccaaggatcgtttcaaaaagagaaactttcaccattacctacgtgacacaccaaattagccgcaaaccaacctgcctcaggcacgcc |
1405 |
T |
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| Q |
254 |
tactccct |
261 |
Q |
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| T |
1406 |
tactccct |
1413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 261
Target Start/End: Complemental strand, 10107478 - 10107371
Alignment:
| Q |
154 |
aacccccttccaaccaaggatcattctaagaagagaaactttcaccattacataggcgacaacccaaactaacctcaaatcaacctctctcccgcacacc |
253 |
Q |
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|||||||||||| ||||||||| || || ||||||||||||||||||||| || | |||| ||||| || || |||| |||||| ||| |||| || |
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| T |
10107478 |
aacccccttccagccaaggatcgtttcaaaaagagaaactttcaccattacctacgtgacacaccaaattagccgcaaaccaacctgcctcaggcacgcc |
10107379 |
T |
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| Q |
254 |
tactccct |
261 |
Q |
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| T |
10107378 |
tactccct |
10107371 |
T |
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