View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4367_low_5 (Length: 270)
Name: NF4367_low_5
Description: NF4367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4367_low_5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 101 - 270
Target Start/End: Original strand, 1792234 - 1792399
Alignment:
| Q |
101 |
ctcaaaaaatcgtcttaacaagcttctttcctttgaccaccaatcatctttgcctttaaaagtaagtactcaagtctttacaatcccacatctctctaag |
200 |
Q |
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| T |
1792234 |
ctcaaaaaattgtcttaacaagcttctttcctttgaccaccaatcatctttgcctttaaaagt----actcaagtctctacaatcccacatctctctaag |
1792329 |
T |
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| Q |
201 |
tacgcttctcattaccattttcgtgaaaaccaaacatattgatgttgaagaatattgaaaagcacttccc |
270 |
Q |
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| T |
1792330 |
tacgcttctcattaccattttcgtgaaaaccaaacatattgatgttgaagaatattgaaaagcacttccc |
1792399 |
T |
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Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 1791759 - 1791842
Alignment:
| Q |
26 |
caagaccaaattataatatatgcagttttctatttcatatatgcaattttcttaaagattgaaaatgagttttcactcaaaaaa |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1791759 |
caagaccaaattataatatatgcagttttctatttcatatatgcagttttcttaaagattgaaaatgagttttcactcaaaaaa |
1791842 |
T |
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