View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4367_low_8 (Length: 210)
Name: NF4367_low_8
Description: NF4367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4367_low_8 |
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| [»] chr8 (2 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 30336187 - 30336060
Alignment:
| Q |
17 |
tacatcaaatacatagtctcatataatgacataaataaatactaattctaatgggtacaaatgatatgatcatgtctgaaataaccatgcctcggctacc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||| |||||||||||||||||| ||||| |
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| T |
30336187 |
tacatcaaatacatagtctcatataatgacataaataaatactaa--ctgatgggtacaaatcatatgatcatgtatgaaataaccatgcctcgactacc |
30336090 |
T |
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| Q |
117 |
aagtaaacactaaacaaaccatatttatta |
146 |
Q |
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| T |
30336089 |
aagtacacactacataaaccatatttatta |
30336060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 597263 - 597197
Alignment:
| Q |
144 |
ttaattgtggtgcactgactgtgtaaaagaactttacacagtcagccaataacattttgccacataa |
210 |
Q |
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| T |
597263 |
ttaattgtggtgcactgactgtgtaaaagaactttacacagtcagtcaataacattttgccacataa |
597197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 596683 - 596749
Alignment:
| Q |
144 |
ttaattgtggtgcactgactgtgtaaaagaactttacacagtcagccaataacattttgccacataa |
210 |
Q |
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| T |
596683 |
ttaattatggtgcactgactgtataaaagaactttacacagttaaccaataaattttttccacataa |
596749 |
T |
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Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 26936801 - 26936867
Alignment:
| Q |
144 |
ttaattgtggtgcactgactgtgtaaaagaactttacacagtcagccaataacattttgccacataa |
210 |
Q |
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| T |
26936801 |
ttaattgtggtgcactgactgtgtaaaagaactttacacagtcagccaataacattttgccacataa |
26936867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 26937360 - 26937304
Alignment:
| Q |
154 |
tgcactgactgtgtaaaagaactttacacagtcagccaataacattttgccacataa |
210 |
Q |
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| T |
26937360 |
tgcactcactgtgtaaaagaaatttacacagtcagccaataaaattttgccacataa |
26937304 |
T |
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Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 19341914 - 19341979
Alignment:
| Q |
144 |
ttaattgtggtgcactgactgtgtaaaagaactttacacagtcagccaataacattttgccacata |
209 |
Q |
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| T |
19341914 |
ttaattgtggtgcactgactgtgtaaaagaactttacacagtcagccaataacattttgccacata |
19341979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 6776028 - 6776092
Alignment:
| Q |
144 |
ttaattgtggtgcactgactgtgtaaaagaactttacacagtcagccaataacattttgccacat |
208 |
Q |
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|||||||| |||||||||| ||||||| | |||||||||||| ||||||||| | |||||||| |
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| T |
6776028 |
ttaattgtagtgcactgacagtgtaaagatagtttacacagtcatccaataacaatctgccacat |
6776092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 6776348 - 6776284
Alignment:
| Q |
144 |
ttaattgtggtgcactgactgtgtaaaagaactttacacagtcagccaataacattttgccacat |
208 |
Q |
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| T |
6776348 |
ttaattgtagtgcactgacagtgtaaagatagtttacacagtcatccaataacaatctgccacat |
6776284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 53731349 - 53731283
Alignment:
| Q |
144 |
ttaattgtggtgcactgactgtgtaaaagaactttacacagtcagccaataacattttgccacataa |
210 |
Q |
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| T |
53731349 |
ttaattgtggtgcactgactgtgtaaaagaactttacacagtcaaccaataacattttgccacataa |
53731283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 53730766 - 53730819
Alignment:
| Q |
142 |
tattaattgtggtgcactgactgtgtaaaagaactttacacagtcagccaataa |
195 |
Q |
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| T |
53730766 |
tattaattgtggtgcactgaccgtgtaaaagaactttacacagttagccaataa |
53730819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 818587 - 818523
Alignment:
| Q |
144 |
ttaattgtggtgcactgactgtgtaaaagaactttacacagtcagccaataacattttgccacat |
208 |
Q |
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|||||||| ||||| |||| ||||||| | |||||||||||| ||||||||| |||||||||| |
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| T |
818587 |
ttaattgtagtgcattgacagtgtaaagatagtttacacagtcatccaataacaatttgccacat |
818523 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 9363341 - 9363277
Alignment:
| Q |
144 |
ttaattgtggtgcactgactgtgtaaaagaactttacacagtcagccaataacattttgccacat |
208 |
Q |
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| T |
9363341 |
ttaattgtagtgctctgacagtgtaaatgcactttacacagtcatccaatagaattttgccacat |
9363277 |
T |
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