View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4368-Insertion-1 (Length: 781)
Name: NF4368-Insertion-1
Description: NF4368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4368-Insertion-1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 491; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 162 - 772
Target Start/End: Complemental strand, 710034 - 709424
Alignment:
| Q |
162 |
gtttcgttaaaccttgtaagttgtaacaatggtcgaagcatgacagttggttaaaaaatacaattcaaatgaaattcacaacctttaacatttagattta |
261 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
710034 |
gttttgttaaaccttgtaagctgtaacaatggtcgaagcatgacagttggttaaaaaatacaattcaaacgaaattcacaacctttaacatttagattta |
709935 |
T |
|
| Q |
262 |
aagatttggtttaatttttattggcaattggtaaaaatacaataattggaaatcttataatttattcatgagtcaatttttatcgtcaatttttatgtgc |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
709934 |
aagatttggtttaatttttattggcaattggtaaaaatacaataattggaaatcttataatttattcatgagaagatttttatcgtcaatttttatgtgc |
709835 |
T |
|
| Q |
362 |
ttcaatttacatgcacaattaatgcctatttttcacaaccagcaagcaatcgacaacactgatgaaatcatgacaagacaccaatatagcttctttaaaa |
461 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
709834 |
ttcaatttacatgcacaactaatgcctatttttcacaaccagcaagcaatcgacaacactgatgaaatcatgacaagacaccaatctaacttctttaaaa |
709735 |
T |
|
| Q |
462 |
ttgcttgaagagacttctaatcaaccaactatacataaggaaaattgaagaattacaagccacaaaagcaacaagaatgcatcgcaaattttaattgtat |
561 |
Q |
| |
|
|| ||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
709734 |
ttatttgaacaaacttctaatcaaccaactatacagaaggaaaattgaagaattacaagccacaaaagcaacaagaatgcatcacaaattttaattgtat |
709635 |
T |
|
| Q |
562 |
tgttattccttcttgatgcaaaatttccttgttacacgaactctcaatcaattacttatttttcgcccatatgggattgcaattaagagatttgttgagg |
661 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||| || |||||||||||| |
|
|
| T |
709634 |
tgttattccttcttgatgcaaaatttccttgttacacgaactctcaatcaattacttatttttcggccatttaagattgcaataaactgatttgttgagg |
709535 |
T |
|
| Q |
662 |
aagaagaagaaattagttaatgttagggttcataacattttcagatttgatggtatgagtccaggaaccattttaggatatgattgaatatgagtagttg |
761 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||| |||||||| |||||||||| |
|
|
| T |
709534 |
aaaaagaagaaattagttaatgttagggttcataacattttcagaattgatggtttgagttcaggagccattttaggataggattgaatgtgagtagttg |
709435 |
T |
|
| Q |
762 |
tacatgtttca |
772 |
Q |
| |
|
||||| ||||| |
|
|
| T |
709434 |
tacatatttca |
709424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 514 - 633
Target Start/End: Complemental strand, 10965634 - 10965516
Alignment:
| Q |
514 |
ttacaagccacaaaagcaacaagaatgcatcgcaaattttaattgtattgttattccttcttgatgcaaaatttccttgttacacgaactctcaatcaat |
613 |
Q |
| |
|
||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| | |||||||| ||||| |
|
|
| T |
10965634 |
ttacaggccacgaaagcaataagaatgcatcgcaaattttaattgtattgttattccctcttgatgcaaaatttcc-tgttataggaactctctctcaat |
10965536 |
T |
|
| Q |
614 |
tacttatttttcgcccatat |
633 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
10965535 |
tacttatttttctcccatat |
10965516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 725 - 771
Target Start/End: Complemental strand, 10965380 - 10965334
Alignment:
| Q |
725 |
ggaaccattttaggatatgattgaatatgagtagttgtacatgtttc |
771 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
10965380 |
ggaaccattttaggataggattgaatgtgagtagttgtacatgtttc |
10965334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 2e-60; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 440 - 633
Target Start/End: Original strand, 27918139 - 27918328
Alignment:
| Q |
440 |
caccaatatagcttctttaaaattgcttgaagagacttctaatcaaccaactatacataaggaaaattgaagaattacaagccacaaaagcaacaagaat |
539 |
Q |
| |
|
||||||| || || ||||||||||||||||| | ||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27918139 |
caccaatctaactcctttaaaattgcttgaacaaacttctaatcaaccaactata-atacagaac--tgaagaattacaagccacaaaagcaacaagaat |
27918235 |
T |
|
| Q |
540 |
gcatcgcaaattttaattgtattgttattccttcttgatgcaaaatttccttgttacacgaactctcaatcaattacttatttttcgcccatat |
633 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27918236 |
gcatcgcaaattttaattgtatttttattccttcttgatgcaaaattt-catgttatacgaactctcaatcaattacttatttttctcccatat |
27918328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 440 - 625
Target Start/End: Complemental strand, 33064322 - 33064149
Alignment:
| Q |
440 |
caccaatatagcttctttaaaattgcttgaagagacttctaatcaaccaactata---cataaggaaaattgaagaattacaagccacaaaagcaacaag |
536 |
Q |
| |
|
||||||| || || ||||||||||| ||||| |||||| | |||||||||||||| || |||||||| ||||||||||||||| |||||| |
|
|
| T |
33064322 |
caccaatctaactcctttaaaattgtttgaacagacttgtcatcaaccaactataatacagaaggaaaactgaagaattacaagc---------aacaag |
33064232 |
T |
|
| Q |
537 |
aatgcatcgcaaattttaattgtattgttattccttcttgatgcaaaatttccttgttacacgaactctcaatcaattacttatttttc |
625 |
Q |
| |
|
|||||||| |||||| ||||||| |||||| |||| ||||||||||||||| ||| | ||||||||||||||||||||||||||| |
|
|
| T |
33064231 |
aatgcatcacaaattctaattgt--tgttatccctt---gatgcaaaatttcct-gttgtatgaactctcaatcaattacttatttttc |
33064149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 632 - 697
Target Start/End: Original strand, 27918358 - 27918423
Alignment:
| Q |
632 |
atgggattgcaattaagagatttgttgaggaagaagaagaaattagttaatgttagggttcataac |
697 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| ||||| |||||||||||| |||||||||||||| |
|
|
| T |
27918358 |
atgggattgcaattaacagatttgttgaagaaaaagaaaaaattagttaattttagggttcataac |
27918423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 182 - 332
Target Start/End: Complemental strand, 44656072 - 44655920
Alignment:
| Q |
182 |
ttgtaacaatggtcgaagcatgacagttggttaaaaaat-acaattcaaatgaaattcacaacctttaacatt-tagatttaaagatttggtttaatttt |
279 |
Q |
| |
|
||||||||| || ||||| || |||||| |||||||| |||||||||| ||| |||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
44656072 |
ttgtaacaaccgttgaagcttggcagttgattaaaaaaacacaattcaaacgaatttcacaacctttaacattctacatttaaagatttggtttaatttt |
44655973 |
T |
|
| Q |
280 |
tattggcaattggtaaaaatacaataattggaaatcttataatttattcatga |
332 |
Q |
| |
|
||| ||||||||||||||| | ||| ||||||||||||||||||||||||||| |
|
|
| T |
44655972 |
tataggcaattggtaaaaacataatcattggaaatcttataatttattcatga |
44655920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 454 - 561
Target Start/End: Original strand, 7754421 - 7754531
Alignment:
| Q |
454 |
ctttaaaattgcttgaagagacttctaatcaaccaactata---cataaggaaaattgaagaattacaagccacaaaagcaacaagaatgcatcgcaaat |
550 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7754421 |
ctttaaaattgcttgaacagacttctaatcaaccaactataatacagaaggaaagctgaagaattacaagccacaaaagcaacaagaatgcatcgcaaat |
7754520 |
T |
|
| Q |
551 |
tttaattgtat |
561 |
Q |
| |
|
||||||||||| |
|
|
| T |
7754521 |
tttaattgtat |
7754531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 3e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 454 - 561
Target Start/End: Original strand, 43552457 - 43552567
Alignment:
| Q |
454 |
ctttaaaattgcttgaagagacttctaatcaaccaactata---cataaggaaaattgaagaattacaagccacaaaagcaacaagaatgcatcgcaaat |
550 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43552457 |
ctttaaaattgcttgaacagacttctaatcaaccaactataatacagaaggaaagctgaagaattacaagccacaaaagcaacaagaatgcattgcaaat |
43552556 |
T |
|
| Q |
551 |
tttaattgtat |
561 |
Q |
| |
|
||||||||||| |
|
|
| T |
43552557 |
tttaattgtat |
43552567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 632 - 721
Target Start/End: Original strand, 42020635 - 42020727
Alignment:
| Q |
632 |
atgggattgcaattaagagatttgttgaggaagaagaagaaattagttaatgttagggttcataac---attttcagatttgatggtatgagt |
721 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||| ||||||||||| |||||| ||||| |
|
|
| T |
42020635 |
atgggattgcaattaacagatttgttgaagaagaagaagaaattagttaattttaaggttcataacttgattttcagattggatggtttgagt |
42020727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 652 - 721
Target Start/End: Complemental strand, 54309119 - 54309046
Alignment:
| Q |
652 |
tttgttgaggaagaagaagaaattagttaatgttagggttcataac----attttcagatttgatggtatgagt |
721 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||| ||||||| |||||||||| ||||| |
|
|
| T |
54309119 |
tttgttgaagaagaagaagaaattagttaattttagggttcataacttcgattttcatatttgatggtttgagt |
54309046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 727 - 769
Target Start/End: Complemental strand, 54309024 - 54308982
Alignment:
| Q |
727 |
aaccattttaggatatgattgaatatgagtagttgtacatgtt |
769 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
54309024 |
aaccattttaagatatgattgaatgtgagtagttgtacatgtt |
54308982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 730 - 770
Target Start/End: Original strand, 42020789 - 42020829
Alignment:
| Q |
730 |
cattttaggatatgattgaatatgagtagttgtacatgttt |
770 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
42020789 |
cattttaggataggattgaatgtgagtagttgtacatgttt |
42020829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 727 - 769
Target Start/End: Complemental strand, 43453587 - 43453545
Alignment:
| Q |
727 |
aaccattttaggatatgattgaatatgagtagttgtacatgtt |
769 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
43453587 |
aaccattttaggatagaattgaatgtgagtagttgtacatgtt |
43453545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 727 - 769
Target Start/End: Complemental strand, 45140602 - 45140560
Alignment:
| Q |
727 |
aaccattttaggatatgattgaatatgagtagttgtacatgtt |
769 |
Q |
| |
|
||||||||||||||| |||| ||| |||||||||||||||||| |
|
|
| T |
45140602 |
aaccattttaggataggattaaatgtgagtagttgtacatgtt |
45140560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University