View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4368-Insertion-2 (Length: 334)
Name: NF4368-Insertion-2
Description: NF4368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4368-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 25 - 332
Target Start/End: Original strand, 31621060 - 31621370
Alignment:
| Q |
25 |
agttgtatcacaattatataacagatttacttgagaaaaaacaccactatcacgttgaaactgatcagcgctctcaaatgtgctgttattaggcttgtca |
124 |
Q |
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||||||||||||||| ||||||||||||| ||||||| |||||| || || | |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31621060 |
agttgtatcacaattgtataacagatttagttgagaagaaacactaccataaggttgaaactggtcagcgctctcaaatgtgctgttattaggcttgtca |
31621159 |
T |
|
| Q |
125 |
ctcacactcacactcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttttattgtcccattcaagaatacggtatttga |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31621160 |
ctcacactcacactcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttgtattgtcccattcaagaatacggtatttga |
31621259 |
T |
|
| Q |
225 |
cgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaac---accacaactctcttctctgtttcctccccagaa |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||| |
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| T |
31621260 |
cgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaacactaccacaacgctcttctctgttatttccccagaa |
31621359 |
T |
|
| Q |
322 |
tggatacttga |
332 |
Q |
| |
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||||||||||| |
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| T |
31621360 |
tggatacttga |
31621370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 25 - 332
Target Start/End: Original strand, 31636055 - 31636365
Alignment:
| Q |
25 |
agttgtatcacaattatataacagatttacttgagaaaaaacaccactatcacgttgaaactgatcagcgctctcaaatgtgctgttattaggcttgtca |
124 |
Q |
| |
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||||||||||||||| ||||||||||||| ||||||| |||||| || || | |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31636055 |
agttgtatcacaattgtataacagatttagttgagaagaaacactaccataaggttgaaactggtcagcgctctcaaatgtgctgttattaggcttgtca |
31636154 |
T |
|
| Q |
125 |
ctcacactcacactcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttttattgtcccattcaagaatacggtatttga |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31636155 |
ctcacactcacactcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttgtattgtcccattcaagaatacggtatttga |
31636254 |
T |
|
| Q |
225 |
cgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaac---accacaactctcttctctgtttcctccccagaa |
321 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||| |
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| T |
31636255 |
cgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaacactaccacaacgctcttctctgttatttccccagaa |
31636354 |
T |
|
| Q |
322 |
tggatacttga |
332 |
Q |
| |
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||||||||||| |
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| T |
31636355 |
tggatacttga |
31636365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 27 - 286
Target Start/End: Original strand, 31616325 - 31616575
Alignment:
| Q |
27 |
ttgtatcacaattatataacagatttacttgagaaaaaacaccactatcacgttgaaactgatcagcgctctcaaatgtgctgttattaggcttgtcact |
126 |
Q |
| |
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||||||||||||| |||||||| |||||||||||| ||||| ||| ||||||||||||| || || ||| ||||| || ||||| || || || | |
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| T |
31616325 |
ttgtatcacaattgtataacaggtttacttgagaagaaacaacaccatcacgttgaaac--at-agtgctatcaaaagttctgttcttgggatt-----t |
31616416 |
T |
|
| Q |
127 |
cacactcacactcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttttattgtcccattcaagaatacggtatttgacg |
226 |
Q |
| |
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| |||||||| | |||| ||||||||||| ||||||||||||||| |||| |||||||||||| || ||| | ||| ||| |||||||||||||| || |
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| T |
31616417 |
c-cactcacattgacagcacaaataccactccagtaatcgtctctggcgatcgtgagtttctgtattatatcattccaatcatgaatacggtatttggcg |
31616515 |
T |
|
| Q |
227 |
tcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaa |
286 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31616516 |
tcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaa |
31616575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 130 - 334
Target Start/End: Original strand, 31606494 - 31606704
Alignment:
| Q |
130 |
actcacactcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttttattgtcccattcaagaatacggtatttgacgtca |
229 |
Q |
| |
|
||||||| |||||| ||||||||||| |||| |||| ||||| |||||||||||||| ||| || ||| || ||| |||||||| |||||||||||||| |
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| T |
31606494 |
actcacattcacagcacaaataccactccagcaatcttctctggcgactgtgagtttttgtattgtatcgttccaatcaagaatgcggtatttgacgtcg |
31606593 |
T |
|
| Q |
230 |
ttgatggttatctttggaacactttcttcgcatgtaagctccatattaggatc---agaaacaccacaactctct---tctctgtttcctccccagaatg |
323 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || | | ||||| ||| |||||||||||| |
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| T |
31606594 |
ttgatatttatctttggaacactttcttcgcatgtaagatccatattaggatcggaagaaacaccaccacaatatttatctctattttctccccagaatg |
31606693 |
T |
|
| Q |
324 |
gatacttgatg |
334 |
Q |
| |
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||||||||||| |
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| T |
31606694 |
gatacttgatg |
31606704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 140 - 332
Target Start/End: Original strand, 31610334 - 31610529
Alignment:
| Q |
140 |
acagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttttattgtcccattcaagaatacggtatttgacgtcattgatggtta |
239 |
Q |
| |
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|||| ||||||||||| ||||||||||||||| || ||| ||||| |||||||| ||||||||||||||||||||||||||||||| ||| || |||| |
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| T |
31610334 |
acagcacaaataccactccagtaatcgtctctggcaactctgagtctctgtgttgtattgtcccattcaagaatacggtatttgaccaaattaattgtta |
31610433 |
T |
|
| Q |
240 |
tctttggaacactttcttcgcatgtaagctccatattaggat---cagaaacaccacaactctcttctctgtttcctccccagaatggatacttga |
332 |
Q |
| |
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|||| || |||||| |||||||| |||||||| ||||||| |||||||||||||| || ||||||||||||||||||| | |||||||||| |
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| T |
31610434 |
tcttagggacacttccttcgcatacgagctccatcttaggatcaccagaaacaccacaatacttttctctgtttcctccccagtacggatacttga |
31610529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 327
Target Start/End: Original strand, 31597326 - 31597496
Alignment:
| Q |
157 |
ccagtaatcgtctctagcgactgtgagtttctgtgttttattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttct |
256 |
Q |
| |
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||||||||| ||||| || ||| | ||| || ||||| ||||| ||||||||||||||| ||||| ||| |||||| |||||||| || || || || |
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| T |
31597326 |
ccagtaatcatctcttgcaactctaagtctcagtgttgcattgttccattcaagaatacgatatttcacgaaattgatcgttatcttcgggacttttcct |
31597425 |
T |
|
| Q |
257 |
tcgcatgtaagctccatattaggatcagaaacaccacaactctcttctctgtttcctccccagaatggata |
327 |
Q |
| |
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||||||||||||| |||||||||||| |||||||||||| | | |||| ||| |||||||||||||||| |
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|
| T |
31597426 |
tcgcatgtaagcttcatattaggatcggaaacaccacaataatttcctctattttctccccagaatggata |
31597496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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