View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4368-Insertion-3 (Length: 317)
Name: NF4368-Insertion-3
Description: NF4368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4368-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 108 - 313
Target Start/End: Complemental strand, 46933757 - 46933552
Alignment:
| Q |
108 |
tagcgatgttcaatttgtgtttgattctaattacaaatagtagaattaatgtctttttcacaaacatatacactttatgaaactagccataaaactttag |
207 |
Q |
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| T |
46933757 |
tagcgatgttcaatttgtgtttgattctaattacaaatagtagaattaatgtctttttcacaaacatatacactttatgaaactagccataaaactttag |
46933658 |
T |
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| Q |
208 |
ctctcacaatttctcattttctactaaatttataatttataatgaaaaattgctcgacatttggtttagattcattggatttcatttttcctaacttaaa |
307 |
Q |
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| T |
46933657 |
ctctcacaatttctcattttctactaaatttataatttataatgaaaaattgctcgacatttggtttagattcattggatttcatttttcctaacttaaa |
46933558 |
T |
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| Q |
308 |
tactca |
313 |
Q |
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|||||| |
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| T |
46933557 |
tactca |
46933552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 46933857 - 46933829
Alignment:
| Q |
8 |
caaactacatataagctcatgaactctac |
36 |
Q |
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| T |
46933857 |
caaactacatataagctcatgaactctac |
46933829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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