View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4368-Insertion-4 (Length: 266)

Name: NF4368-Insertion-4
Description: NF4368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4368-Insertion-4
NF4368-Insertion-4
[»] chr4 (5 HSPs)
chr4 (8-164)||(7054380-7054536)
chr4 (162-266)||(7054234-7054338)
chr4 (168-266)||(1702373-1702473)
chr4 (168-266)||(9991025-9991125)
chr4 (168-266)||(16613376-16613476)
[»] chr2 (4 HSPs)
chr2 (8-161)||(38980944-38981097)
chr2 (162-266)||(38981138-38981242)
chr2 (32-164)||(24867259-24867391)
chr2 (171-241)||(24867137-24867207)
[»] scaffold0320 (2 HSPs)
scaffold0320 (12-164)||(13604-13756)
scaffold0320 (162-261)||(13798-13897)
[»] scaffold0442 (2 HSPs)
scaffold0442 (8-164)||(12223-12379)
scaffold0442 (162-266)||(12077-12181)
[»] chr8 (4 HSPs)
chr8 (8-164)||(8212377-8212533)
chr8 (8-164)||(9290638-9290794)
chr8 (164-266)||(9290838-9290940)
chr8 (162-255)||(8212575-8212668)
[»] chr3 (2 HSPs)
chr3 (8-164)||(51424831-51424986)
chr3 (162-266)||(51425028-51425132)
[»] chr6 (2 HSPs)
chr6 (52-160)||(24999465-24999573)
chr6 (168-217)||(24999629-24999678)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 7054536 - 7054380
Alignment:
Q  8 attccatccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7054536 attccatccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaa 7054437  T
Q  108 ctctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7054436 ctctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa 7054380  T

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Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 162 - 266
Target Start/End: Complemental strand, 7054338 - 7054234
Alignment:
Q  162 caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgc 261  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7054338 caagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgc 7054239  T
Q  262 tcaag 266  Q
    |||||    
T  7054238 tcaag 7054234  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 168 - 266
Target Start/End: Complemental strand, 1702473 - 1702373
Alignment:
Q  168 agatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatga--atatacatgctcaa 265  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||| |||| |||||||||| ||||||||  || ||||||  ||||||||||||||    
T  1702473 agatcaaagtaccaagagaaggtgcaaaaaatatggaaacaaagccacgtagtaggatgaaaaggccaagtagagcggggatgattatatacatgctcaa 1702374  T
Q  266 g 266  Q
    |    
T  1702373 g 1702373  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 168 - 266
Target Start/End: Complemental strand, 9991125 - 9991025
Alignment:
Q  168 agatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatga--atatacatgctcaa 265  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||| |||| |||||||||| ||||||||  || ||||||  ||||||||||||||    
T  9991125 agatcaaagtaccaagagaaggtgcaaaaaatatggaaacaaagccacgtagttggatgaaaaggccaagtagagcggggatgattatatacatgctcaa 9991026  T
Q  266 g 266  Q
    |    
T  9991025 g 9991025  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 168 - 266
Target Start/End: Complemental strand, 16613476 - 16613376
Alignment:
Q  168 agatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatga--atatacatgctcaa 265  Q
    ||||||||||||||||||| |||||||  ||||| ||||||||||||| |||| |||||||||||||||||||| || ||||||  |||||||| |||||    
T  16613476 agatcaaagtaccaagagaaggtgcaagcaatatggaaacaaagccacgtagtaggatgaaaagaccaagtagtgcggggatgattatatacattctcaa 16613377  T
Q  266 g 266  Q
    |    
T  16613376 g 16613376  T

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Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 38980944 - 38981097
Alignment:
Q  8 attccatccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaa 107  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38980944 attccatccttttaatttaatatatttctctttcttttgttgacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaa 38981043  T
Q  108 ctctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaat 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38981044 ctctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaat 38981097  T

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Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 162 - 266
Target Start/End: Original strand, 38981138 - 38981242
Alignment:
Q  162 caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgc 261  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38981138 caagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagccgcatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgc 38981237  T
Q  262 tcaag 266  Q
    |||||    
T  38981238 tcaag 38981242  T

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Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 32 - 164
Target Start/End: Complemental strand, 24867391 - 24867259
Alignment:
Q  32 tttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattc 131  Q
    |||||||||| ||| || ||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||||| ||||| |||     
T  24867391 tttctctttcatttatgtacattgagagtgtggtgtcaattgagacgatgaacacgtcttacattttgatggtgaactttatatttaactatttttattt 24867292  T
Q  132 atgtattgaagaatgctaggttttttgaatcaa 164  Q
    ||||||||||||| | ||||| | |||||||||    
T  24867291 atgtattgaagaacgataggtctcttgaatcaa 24867259  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 24867207 - 24867137
Alignment:
Q  171 tcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagt 241  Q
    |||||| || || ||| |||||||| |||||   |||||||||| |||||||||||||||| |||||||||    
T  24867207 tcaaagaacaaaaagaaggtgcaaacaatatgagaacaaagccaaatagtgggatgaaaaggccaagtagt 24867137  T

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Target: scaffold0320 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 12 - 164
Target Start/End: Original strand, 13604 - 13756
Alignment:
Q  12 catccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactct 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  13604 catccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaacttt 13703  T
Q  112 atatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13704 atatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa 13756  T

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Target: scaffold0320; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 162 - 261
Target Start/End: Original strand, 13798 - 13897
Alignment:
Q  162 caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgc 261  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  13798 caagaaagatcaaagtaccaagtgatggtgcaaacaatatagaaacaaagccacatagtgggatgaaaagacctagtagtacgagaatgaatatacatgc 13897  T

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Target: scaffold0442 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 12379 - 12223
Alignment:
Q  8 attccatccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaa 107  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12379 attccatccttttaatttaatatatatctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactctgatggtgaa 12280  T
Q  108 ctctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12279 ctctatatttaacaattttgattcatgtattgaagaatgctaggttttttcaatcaa 12223  T

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Target: scaffold0442; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 162 - 266
Target Start/End: Complemental strand, 12181 - 12077
Alignment:
Q  162 caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgc 261  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12181 caagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagccacatagttggatgaaaagaccaagtagtacgaggatgaatatacatgc 12082  T
Q  262 tcaag 266  Q
    |||||    
T  12081 tcaag 12077  T

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Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 8212377 - 8212533
Alignment:
Q  8 attccatccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaa 107  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8212377 attccatcctttaaatttaatatatttctctttcttttatggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaa 8212476  T
Q  108 ctctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa 164  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8212477 ctctatatttaacaattttgattcatgtattgaataatgctaggttttttgaatcaa 8212533  T

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Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 9290638 - 9290794
Alignment:
Q  8 attccatccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaa 107  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9290638 attccatccttttaaattaatatatttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatattacactttgatggtgaa 9290737  T
Q  108 ctctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa 164  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9290738 ctctatatttagcaattttgattcatgtattgaagaatgctaggttttttgaatcaa 9290794  T

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Target: chr8; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 9290838 - 9290940
Alignment:
Q  164 agaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgctc 263  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  9290838 agaaagatcaaagtaccaagagatggtgcaagcaatatagaaacaaagccacatagtgggatgaaaagatcaagtagtactaggatgaatatacatgctc 9290937  T
Q  264 aag 266  Q
    |||    
T  9290938 aag 9290940  T

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Target: chr8; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 162 - 255
Target Start/End: Original strand, 8212575 - 8212668
Alignment:
Q  162 caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatat 255  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8212575 caagaaatatcaaagtaccaagagatggtgcaaaaaatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggataaatat 8212668  T

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Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 51424831 - 51424986
Alignment:
Q  8 attccatcctttt-aatttaatatatttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtga 106  Q
    ||||||||||||| ||||||||||  |||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  51424831 attccatcctttttaatttaatat--ttctatttcttttgtggacattgagagtgtggtgtcaattgagacgatgaacgcatcttacactttgatggtga 51424928  T
Q  107 actctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa 164  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  51424929 actctatatttaacaagtttgattcatgaattgaagaatgctaggttttttgaatcaa 51424986  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 162 - 266
Target Start/End: Original strand, 51425028 - 51425132
Alignment:
Q  162 caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgc 261  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |    
T  51425028 caagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagccacatagtgggatgaaaagatcaagtagtacaaggatgaatatacattc 51425127  T
Q  262 tcaag 266  Q
    |||||    
T  51425128 tcaag 51425132  T

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Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 52 - 160
Target Start/End: Original strand, 24999465 - 24999573
Alignment:
Q  52 attgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctagg 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||  ||||||||||| |||||||    
T  24999465 attgagagtgtggtgtcaattgagatgatgaacacatcttacactttgacgatgaactctatatttaacaattttgatttctgtattgaagagtgctagg 24999564  T
Q  152 ttttttgaa 160  Q
    ||| |||||    
T  24999565 tttcttgaa 24999573  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 24999629 - 24999678
Alignment:
Q  168 agatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacat 217  Q
    ||||||||||||||||||| |||||||| ||||| |||| ||||||||||    
T  24999629 agatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccacat 24999678  T

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