View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4368-Insertion-6 (Length: 206)
Name: NF4368-Insertion-6
Description: NF4368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4368-Insertion-6 |
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| [»] scaffold0009 (3 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 39629 - 39809
Alignment:
| Q |
20 |
tctctttctccatcgatttcatttgatcatgatgcagccatcagtgatcaataaaagagtaaaacatacgacaaagtcgaggtccatcaatgatctttca |
119 |
Q |
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| T |
39629 |
tctctttctccatcgatttcatttgatcatgatgcagccatcagtgatcaataaaagagtaaaacatacgacaaagtcgaggtccatcaatgatctttca |
39728 |
T |
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| Q |
120 |
aacgacgtactcattcacatactctcttttcttccgatcaaagacgctttcagaactaccattctttctaagaggtggttc |
200 |
Q |
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| T |
39729 |
aacgacgtactcattcacatactctcttttcttccgatcaaatacgctttcagaactaccattctttccaagaggtggttc |
39809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 40 - 176
Target Start/End: Original strand, 33028 - 33164
Alignment:
| Q |
40 |
atttgatcatgatgcagccatcagtgatcaataaaagagtaaaacatacgacaaagtcgaggtccatcaatgatctttcaaacgacgtactcattcacat |
139 |
Q |
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| T |
33028 |
atttgataatgatgcagccatcggtgatcaataaaagagtaaaacatacgacaaagtcgaggtccatcaacgatctcgcaaacgacctactcattcacat |
33127 |
T |
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| Q |
140 |
actctcttttcttccgatcaaagacgctttcagaact |
176 |
Q |
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| T |
33128 |
actctcttttcttccgatcaagtatgctttcagaact |
33164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 41 - 206
Target Start/End: Original strand, 21382 - 21541
Alignment:
| Q |
41 |
tttgatcatgatgcagccatcagtgatcaataaaagagtaaaacatacgacaaagtcgaggtccatcaatgatctttcaaacgacgtactcattcacata |
140 |
Q |
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| T |
21382 |
tttgataacgatgcagccatcggcgatcaataaaagagtaaaacatgcg------tcgagttcgatcaacgatcttacagacgacctactcatttacatt |
21475 |
T |
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| Q |
141 |
ctctcttttcttccgatcaaagacgctttcagaactaccattctttctaagaggtggttcctactg |
206 |
Q |
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| T |
21476 |
ctctcttttcttccgatcaaatatgctttcagaactaccgttctttccaagcgatggttcccactg |
21541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 16259631 - 16259575
Alignment:
| Q |
141 |
ctctcttttcttccgatcaaagacgctttcagaactaccattctttctaagaggtgg |
197 |
Q |
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| T |
16259631 |
ctctcttttcttccaatcaaagacgctttcagaactaccattctttcgaagaggtgg |
16259575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 16229322 - 16229266
Alignment:
| Q |
141 |
ctctcttttcttccgatcaaagacgctttcagaactaccattctttctaagaggtgg |
197 |
Q |
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| T |
16229322 |
ctctcttttcttccaatcaaagaggctttcagaactaccattctttcgaagaggtgg |
16229266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 1348842 - 1348798
Alignment:
| Q |
157 |
tcaaagacgctttcagaactaccattctttctaagaggtggttcc |
201 |
Q |
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| T |
1348842 |
tcaaagacgctttcagaactaccattctttctaagagatggttcc |
1348798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 19970635 - 19970572
Alignment:
| Q |
134 |
tcacatactctcttttcttccgatcaaagacgctttcagaactaccattctttctaagaggtgg |
197 |
Q |
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| T |
19970635 |
tcacattctctcttttcttccaatcagagacgctttcagaaccaccgtgctttccaagacgtgg |
19970572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 32243226 - 32243170
Alignment:
| Q |
141 |
ctctcttttcttccgatcaaagacgctttcagaactaccattctttctaagaggtgg |
197 |
Q |
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| T |
32243226 |
ctcttttttcttccagtcaaagacgctttcagaactaccattctttcgaagaggtgg |
32243170 |
T |
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