View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4368_high_1 (Length: 431)
Name: NF4368_high_1
Description: NF4368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4368_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 20 - 418
Target Start/End: Complemental strand, 36605277 - 36604879
Alignment:
| Q |
20 |
ataacgcactatcaaatccatcaaacaaatctctctgtgtgaaaaatggcgccgaataagaaatctagggtttccgatgatgaagaaattgaagatcaac |
119 |
Q |
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| T |
36605277 |
ataacgcactatcaaatccatcaaacaaatctctctgtgtgaaaaatggcgccgaataagaaatctagggtttccgatgatgaagaaattgaagatcaac |
36605178 |
T |
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| Q |
120 |
ctcaaaagagtctctaccaggtaccgtaaattcacgctttattatctcgcctctgcaaattttcatttcgctcttattctcagaatatttttggcgtgtg |
219 |
Q |
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| T |
36605177 |
ctcaaaagagtctctaccaggtaccgtaaattcacgctttattatctcgcctctgcaaattttcatttcgctcttattctcagaatatttttggcgtgtg |
36605078 |
T |
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| Q |
220 |
aatgtgatttatgttggttttctgttccacaatagtgatttgattcnnnnnnncttcgtttatatatgaccatcttgaacaaagtttgtatttgtctgtg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36605077 |
aatgtgatttatgttggttttctgttccacaatagtgatttgattctttttttcttcgtttatatatgaccatcttgaacaaagtttgtatttgtctgtg |
36604978 |
T |
|
| Q |
320 |
tgtgttagggtaagggtttatcaaataagattttcagtgatttttgtaaaatttattcctttagattgagtttgaatttaagtgatttatgttttgatg |
418 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36604977 |
tgtgttagggtaagggtttatcaaatgagattttcagtgatttttgtaaaattgattcctttagattgagtttgaatttaagtgatttatgttttgatg |
36604879 |
T |
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