View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4368_low_2 (Length: 388)
Name: NF4368_low_2
Description: NF4368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4368_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 40448286 - 40448659
Alignment:
| Q |
1 |
ctaattcacaaaaactatatatgttaatttgaagacaattttattttgtgtaatataatattaccatatcacacaaccaattagtccacgattcctccat |
100 |
Q |
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| T |
40448286 |
ctaattcacaaaaactatatatgttaatttgaagacaattttattttgtgtaatatgatattaccatatcacacaaccaattagtccacgattcctccat |
40448385 |
T |
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| Q |
101 |
agaactcatatgcttatgcttgttatttgcaagcaagccaagaatcaatgatgctgaaagaaatgaaaaattggtcatatgatttgatattaagaaaata |
200 |
Q |
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| T |
40448386 |
agaactcatatgcttatgcttgttatttgcaagcaagccaagaatcaatgatgctgaaagaaatgaaaaattggtcatatgatttgatattaagaaaata |
40448485 |
T |
|
| Q |
201 |
ctatatatgcaattgatacattctaagtgaaaatgaaatttattacctcccctggctctagctgaatagcacagtctagtattgaaaagaataagttatt |
300 |
Q |
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| T |
40448486 |
c----tatgcaattgatacattctaagtgaaaatgaaatttattacctcccctggctctagctgaatagcacaatctagtcttgaaaagattaagttatt |
40448581 |
T |
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| Q |
301 |
tcgtttgcctgt------atataaataaacagcaccaacattaggaagtaatgaaatggcaacttttttcggcatatt |
372 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40448582 |
tcgtttgcctgtatataaatataaataaacagcaccaacattaggaagtaatgaaatggcaacttttttcggcatatt |
40448659 |
T |
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