View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4368_low_3 (Length: 316)

Name: NF4368_low_3
Description: NF4368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4368_low_3
NF4368_low_3
[»] chr8 (1 HSPs)
chr8 (1-298)||(42243313-42243608)


Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 42243313 - 42243608
Alignment:
Q  1 attgtcattcaactaatgatatcatggcagatgaaatatttaggttggattgtcaactaatgttacatacaaaattggcaaaaggcaggaattgatattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42243313 attgtcattcaactaatgatatcatggcagatgaaatatttaggttggattgtcaactaatgttacatacaaaattggcaaaaggcaggaattgatattt 42243412  T
Q  101 ctgtttggatctactgatatgtatctgttacaaccacaaattcaaatcatttaaacacacatgtaaaattacacattatttaattagttcaatagtgaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42243413 ctgtttggatctactgatatgtatctgttacaaccacaaattcaaatcatttaaacacacatgtaaaattacacattatttaattagttcaatagtgaaa 42243512  T
Q  201 aaatttgactattcatttcgaacnnnnnnnncttctcttctatttgtggtttgtaattacacaagttttgctcatataagcatcttaaaccacactag 298  Q
    |||||||||||||||||||||||         |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42243513 aaatttgactattcatttcgaacttttttt--ttctcttctatttgtggtttgtgattacacaagttttgctcatataagcatcttaaaccacactag 42243608  T

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