View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4369-Insertion-1 (Length: 1086)
Name: NF4369-Insertion-1
Description: NF4369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4369-Insertion-1 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 499; Significance: 0; HSPs: 16)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 413 - 975
Target Start/End: Complemental strand, 1898966 - 1898405
Alignment:
| Q |
413 |
aagaatcaaatgcaaaaattgaatttactataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtg |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1898966 |
aagaatcaaatgcaaaaattgaatttactataccttccaacatgaagagtatcaccaagaaacataacacctaagccagcagaaataacaatttgaagtg |
1898867 |
T |
|
| Q |
513 |
gcttgaatgaggttacatagactgccccctttaagcgaactgtccaagcacaaactgcaatgcctataaactttccaaaaatagcctagaaaaagagacg |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1898866 |
gcttgaatgaggttacatagactgccccctttaagcgaactgtccaagcacaaactgcaatgcctataaactttccaaaaatagcctagaaaaagagacg |
1898767 |
T |
|
| Q |
613 |
tgtcatcaatgaagtacacaaccttaagaggtttaaatatcttataaatgatatttccagtttcaacaaataatttgacatcaaaagcataaaactacta |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1898766 |
tgtcatcaatgaagtacacaaccttaagaggtttaaatattttataaatgatatttcaagtttcaacaaacaatttgacatcaaaagcataaaactacta |
1898667 |
T |
|
| Q |
713 |
agatggttaacacaattcaaatatgtgcttcattacgtcccgtgactgctttatcaagtgttgcaacttattaatcgttcactcaaacgcaattaaccac |
812 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||| |||||||||||||||||| ||| ||||||||||| |
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|
| T |
1898666 |
agatggttaacacaattcaaatatgtgcttaattacgtcccgtgactgatttatcaagtgtcgcatcttattaatcgttcactc-aacccaattaaccac |
1898568 |
T |
|
| Q |
813 |
aaatttgttaacttcggtttacaagggtatataggaacttaaattatgattaatgaataccatttatatttgaacacaatttaaatagttaatcagtcta |
912 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
1898567 |
aaatttgttaacttcggtttacaaaagtatattggaacttaaactatgattaatgaataccatttatatttgaacacaatttaaatagttaatcggtcta |
1898468 |
T |
|
| Q |
913 |
tttatatttgaacactatagtagaggttgacgaagttcaaagtcgtggttaaccagataattg |
975 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1898467 |
tttatatttgaacactatagtagaggttgacgaagttcaaagtcgtggttaaccagataattg |
1898405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 404 - 599
Target Start/End: Complemental strand, 1904181 - 1903985
Alignment:
| Q |
404 |
tttcaagcaaagaatcaaatgcaaaaa-ttgaatttactataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataaca |
502 |
Q |
| |
|
||||||||||||||||||| ||||||| || || | || ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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|
| T |
1904181 |
tttcaagcaaagaatcaaaagcaaaaaattcaaataaccataccttccaacatgaagagtatcaccaaggaatataacacccaagccagcagaaataaca |
1904082 |
T |
|
| Q |
503 |
atttgaagtggcttgaatgaggttacatagactgccccctttaagcgaactgtccaagcacaaactgcaatgcctataaactttccaaaaatagcct |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| |||||||||| | ||||||| |||||||| ||||| |||| |
|
|
| T |
1904081 |
atttgaagtggcttgaatgaggttacatagactgccccctttaaccgaacagaccaggcacaaactgtattgcctatcaactttccgaaaattgcct |
1903985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 404 - 599
Target Start/End: Complemental strand, 1908414 - 1908218
Alignment:
| Q |
404 |
tttcaagcaaagaatcaaatgcaaaaa-ttgaatttactataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataaca |
502 |
Q |
| |
|
||||||||||||||||||| ||||||| || || | || ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
1908414 |
tttcaagcaaagaatcaaaagcaaaaaattcaaataaccataccttccaacatgaagagtatcaccaaggaatataacacccaagccagcagaaataaca |
1908315 |
T |
|
| Q |
503 |
atttgaagtggcttgaatgaggttacatagactgccccctttaagcgaactgtccaagcacaaactgcaatgcctataaactttccaaaaatagcct |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| |||||||||| | ||||||| |||||||| ||||| |||| |
|
|
| T |
1908314 |
atttgaagtggcttgaatgaggttacatagactgccccctttaaccgaacagaccaggcacaaactgtattgcctatcaactttccgaaaattgcct |
1908218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 197 - 354
Target Start/End: Complemental strand, 1899227 - 1899070
Alignment:
| Q |
197 |
acggtttttgttaaaggtatttccagtttgattccaaaaagaatcagttcggnnnnnnngtaaaggtattttcagctcggtagaaaaccacataatcggt |
296 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1899227 |
acggtttttgttaaaggtatttcaagtttgattccaaaaagaatcagttcggtttttttgtaaaggtattttcagctcggttgaaaaccacataatcggt |
1899128 |
T |
|
| Q |
297 |
gcactaaacggtttggaacgaaccattaacagttctgttgagttttatcaaattgttg |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||| ||||||| |||||||| |
|
|
| T |
1899127 |
gcactaaacggtttggaacgaaccattaacaattcagttgaattttatcgaattgttg |
1899070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 413 - 546
Target Start/End: Complemental strand, 1888404 - 1888271
Alignment:
| Q |
413 |
aagaatcaaatgcaaaaattgaatttactataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtg |
512 |
Q |
| |
|
||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| || |||||||||||||||| |||| |
|
|
| T |
1888404 |
aagaatccaattcaaaaattgaattaactataccttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtg |
1888305 |
T |
|
| Q |
513 |
gcttgaatgaggttacatagactgccccctttaa |
546 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||| |
|
|
| T |
1888304 |
gcttgaatgatgttacatagacagctccctttaa |
1888271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 411 - 547
Target Start/End: Complemental strand, 1914285 - 1914150
Alignment:
| Q |
411 |
caaagaatcaaatgcaaaaattgaatttactataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaag |
510 |
Q |
| |
|
||||||||||||||||||| ||||||| || ||||||||||| ||||||||||||||||||||| ||||| || || | | |||| ||||||||||| || |
|
|
| T |
1914285 |
caaagaatcaaatgcaaaa-ttgaattaaccataccttccaagatgaagagtatcaccaaggaatataactcccaaccaaacagagataacaatttgcag |
1914187 |
T |
|
| Q |
511 |
tggcttgaatgaggttacatagactgccccctttaag |
547 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1914186 |
tggcttgaatgaggttacatagacagccccctttaag |
1914150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 428 - 543
Target Start/End: Complemental strand, 1893239 - 1893124
Alignment:
| Q |
428 |
aaattgaatttactataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgaggtta |
527 |
Q |
| |
|
||||| |||| || ||||||||||| ||||||| ||||||||||||| ||||| ||||||||| |||||||||||||||| || |||||||||||||||| |
|
|
| T |
1893239 |
aaattaaattaaccataccttccaatatgaagaatatcaccaaggaatataactcctaagccaacagaaataacaatttgtagaggcttgaatgaggtta |
1893140 |
T |
|
| Q |
528 |
catagactgccccctt |
543 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
1893139 |
catagacagccccctt |
1893124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 427 - 604
Target Start/End: Complemental strand, 1881090 - 1880913
Alignment:
| Q |
427 |
aaaattgaatttactataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgaggtt |
526 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||||| |||||| | ||| || |||||| |||||||| |||||||||||||| ||| |
|
|
| T |
1881090 |
aaaattgaataaaccataccttccaacatgaagagtatcaccaaggaatataacagccaaggcaacagaaaacacaatttggagtggcttgaatgatgtt |
1880991 |
T |
|
| Q |
527 |
acatagactgccccctttaagcgaactgtccaagcacaaactgcaatgcctataaactttccaaaaatagcctagaaa |
604 |
Q |
| |
|
|||||||| || ||||||||||| | || ||| ||| ||||| | ||| ||| || ||||||||||| |||||||| |
|
|
| T |
1880990 |
acatagacagctccctttaagcgcaatgaccatgcataaactatactgcttattaattttccaaaaatcccctagaaa |
1880913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 722 - 890
Target Start/End: Complemental strand, 1903876 - 1903702
Alignment:
| Q |
722 |
acacaattcaaatatgtgcttcattacgtcccgtgactgctttatcaagtgttgcaacttattaatcgttcactcaaacgcaattaaccacaaatttg-- |
819 |
Q |
| |
|
|||||||||||||| ||| || ||||||||| ||||||| ||| |||||||| ||||| ||| ||||| ||||| | ||||||||||||||||||| |
|
|
| T |
1903876 |
acacaattcaaataagtgtttaattacgtccagtgactgatttgtcaagtgtcacaactcattcatcgtccactcgat-gcaattaaccacaaatttgaa |
1903778 |
T |
|
| Q |
820 |
-----ttaacttcggtttacaagggtatataggaacttaaattatgattaatgaataccatttatatttgaacaca |
890 |
Q |
| |
|
||||| | ||| |||| |||||| |||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1903777 |
tatcgttaaccatgattttcaagtgtatattggaactcaaattatgattaatgaatatcatttatatttgaacaca |
1903702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 722 - 890
Target Start/End: Complemental strand, 1908109 - 1907935
Alignment:
| Q |
722 |
acacaattcaaatatgtgcttcattacgtcccgtgactgctttatcaagtgttgcaacttattaatcgttcactcaaacgcaattaaccacaaatttg-- |
819 |
Q |
| |
|
|||||||||||||| ||| || ||||||||| ||||||| ||| |||||||| ||||| ||| ||||| ||||| | ||||||||||||||||||| |
|
|
| T |
1908109 |
acacaattcaaataagtgtttaattacgtccagtgactgatttgtcaagtgtcacaactcattcatcgtccactcgat-gcaattaaccacaaatttgaa |
1908011 |
T |
|
| Q |
820 |
-----ttaacttcggtttacaagggtatataggaacttaaattatgattaatgaataccatttatatttgaacaca |
890 |
Q |
| |
|
||||| | ||| |||| |||||| |||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1908010 |
tatcgttaaccatgattttcaagtgtatattggaactcaaattatgattaatgaatatcatttatatttgaacaca |
1907935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 1904358 - 1904309
Alignment:
| Q |
256 |
gtaaaggtattttcagctcggtagaaaaccacataatcggtgcactaaac |
305 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
1904358 |
gtaaaggtattttcagctcggttgaaaaccacatgatcagtgcactaaac |
1904309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 1908591 - 1908542
Alignment:
| Q |
256 |
gtaaaggtattttcagctcggtagaaaaccacataatcggtgcactaaac |
305 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
1908591 |
gtaaaggtattttcagctcggttgaaaaccacatgatcagtgcactaaac |
1908542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 1905014 - 1904970
Alignment:
| Q |
33 |
tatacacaaatgaacactttaacaatcatt-taatcagaaatgag |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1905014 |
tatacacaaatgaacactttaacaatcattgaaatcagaaatgag |
1904970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 1909247 - 1909203
Alignment:
| Q |
33 |
tatacacaaatgaacactttaacaatcatt-taatcagaaatgag |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1909247 |
tatacacaaatgaacactttaacaatcattgaaatcagaaatgag |
1909203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 1899524 - 1899493
Alignment:
| Q |
76 |
gacttatactagtagataaactcaaataagtt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
1899524 |
gacttatactagtagataaactcaaataagtt |
1899493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 444 - 519
Target Start/End: Complemental strand, 1919239 - 1919164
Alignment:
| Q |
444 |
accttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaa |
519 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || ||| | || ||| |||||||||| |||||||||||| |
|
|
| T |
1919239 |
accttccaatatgaagagtatcaccaaggaacaaaatacccatagcaacagcaataacaattgaaagtggcttgaa |
1919164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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