View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4369-Insertion-2 (Length: 1032)
Name: NF4369-Insertion-2
Description: NF4369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4369-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 714 - 1002
Target Start/End: Complemental strand, 13382077 - 13381789
Alignment:
| Q |
714 |
gtgaataagatgtgaagcggtttatgtttgtatagtttcacttagaagtgagttgaacaagaattttaaggcaaatcaattccaatcgatatcacccaaa |
813 |
Q |
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| T |
13382077 |
gtgaataagatgtgaagtggtttatgtttgtatagtttcacttagaagtgagttgaacaagaattttaaggcaaatcaattccaatcgatatcacccaaa |
13381978 |
T |
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| Q |
814 |
catgttaaaatcaattgcgtctgaaattacttttagctttccctaccatgaaaccaaacacacttcattttgaatattttgtgaacataggttttaccgg |
913 |
Q |
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| T |
13381977 |
catgtcaaaatcaattgtgtctgaaattacttttagctttccctaccatgaaaccaaacacacttcattttgaatattttgtgaacataggtttcaccgg |
13381878 |
T |
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| Q |
914 |
ttactgtttttaacctgcaagatcactgcaaatcatttgnnnnnnnaaggatgtagaaataatttgatattagtgtcactcctcttgta |
1002 |
Q |
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| T |
13381877 |
ttactgtttttaacctgcaagatcactgcaaatcatttgtttttttaaggatgtagaaataatttgatattagtgtcactcctcttgta |
13381789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 378 - 656
Target Start/End: Complemental strand, 13382409 - 13382135
Alignment:
| Q |
378 |
acttttacggaaactcagatcaagttttcaaaatcaattttatgaaatcattttcacccgattcatttttgtatgttatctttctaatgaaatgtcaaac |
477 |
Q |
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| T |
13382409 |
acttttacataaactgagatcaattttccaaaatcaattt-atgaaatcattttcacccgattcatttttctatgttctttttctaatgacttgtcaaac |
13382311 |
T |
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| Q |
478 |
atttgtccccccacctttggtatgagtttgtgaatgtgaaattgtcaaacaacattttacatgtgaggttttagctggctttgattaggtcaatgaattt |
577 |
Q |
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| T |
13382310 |
atttgtcccc--acctttagtatgagtttgtgaatgtgaaatggtcaaacaacattttacatgtgaggttttagctggctttgattaggtcaatgaattt |
13382213 |
T |
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| Q |
578 |
ggcctctatgaaataaataaaaacactcatttttctaatcaaagtggcctcatcatgcataatataaaacaactccatg |
656 |
Q |
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| T |
13382212 |
ggcctcaataaaataaataaaaacactcatttttctaatcaaagtggcctcatca-gcataatataaaacaactccatg |
13382135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 786 - 847
Target Start/End: Original strand, 37402335 - 37402396
Alignment:
| Q |
786 |
aaatcaattccaatcgatatcacccaaacatgttaaaatcaattgcgtctgaaattactttt |
847 |
Q |
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| T |
37402335 |
aaatcaattccaatggaaatcactcaaacatgttaaaatcaattgtgtctggaatcactttt |
37402396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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