View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4369-Insertion-3 (Length: 853)
Name: NF4369-Insertion-3
Description: NF4369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4369-Insertion-3 |
 | |
|
| [»] chr8 (6 HSPs) |
| |
|
| [»] scaffold0006 (2 HSPs) |
| | |
|
| [»] scaffold0526 (1 HSPs) |
| | |
|
| [»] scaffold0191 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 674; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 55 - 853
Target Start/End: Complemental strand, 27054591 - 27053798
Alignment:
| Q |
55 |
aggagatcgtgatgagtcaatagtatctcatgttcctttcatcgtctattttcgtgttgtatagtgttgtaatatataaaataatagttcaatttaagtt |
154 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27054591 |
aggagattgtgatgagtcaatagtatctcatattcctttcatcatctattttcgtgttgtatagtgttgtaatatataaaataatagttcaatttaagtt |
27054492 |
T |
|
| Q |
155 |
attatacattatatgatagaataaatgatttaataatatttgtggattgttgtgattaattacaccgcgatgaccgcaatctataacgcaacatccgtaa |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27054491 |
attatacattatatgatagaataaatgatttaataatatttgtggattgttgtgattaattacaccgcgatgaccgcaatctataacgcaacatctgtaa |
27054392 |
T |
|
| Q |
255 |
cgatcgaaatcgcgacaaccttaacatgaccgcggccgttatttaaaaccttgatacaaaacatatactat----aaattagtattgcatgcaacaacaa |
350 |
Q |
| |
|
||| ||||||||||||||| |||| |||||||| || ||||||||||| || |||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
27054391 |
cgaccgaaatcgcgacaactttaatgtgaccgcgaccattatttaaaactttaatacaaaacatatactatttataaattagtattgcatacaacaacaa |
27054292 |
T |
|
| Q |
351 |
agaaacccgcaacactctcctatatttttctctcaatctgatctaagtagaaaatattgaagaaatataaccaaacatgaataaaatgcataaccagctt |
450 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27054291 |
agaaacccgcaacactcttctatatttttctctcaatctgatctaagtagaaaatattgaagaaatataaccaaacatgaataa---------ccagctt |
27054201 |
T |
|
| Q |
451 |
aatcacataattcacaccctctttatcttcactatcatcattctttccacactcactgtgagcatatataatttagtttttcattttgtctaatatgcgt |
550 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27054200 |
aatcacataattcacaccctctttatcttcactatcatcattctttccacactcactgtaagcatatataattcagtttttcattttgtctaatatgcgt |
27054101 |
T |
|
| Q |
551 |
gaatactactgcataaccttacactaaaattggtgtatcttagatatataattattttaatatgtttcaaaatttgaattcttgatgttttagtccctta |
650 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27054100 |
gaatactactgcataaccttacactaaaattggtgtatcttagatatataattattttaatatgtttcaaaatttgaattcttgatgttttagtccctta |
27054001 |
T |
|
| Q |
651 |
tatcaatgcaggatggttttgcagtaaatcatgcagaagagaaaaggcaaaactcattcactccaaaggcgtatgcaattcggtattgggacagagtgat |
750 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27054000 |
tgtcaatgcaggaaggttttgcagtaaatcatgcagaagagaaaaggaaaaactcattcactccaaaggcgtatgcaattcggtattgggacagagtgat |
27053901 |
T |
|
| Q |
751 |
caaaaacaacttgccaaaaccatcgttcatcctctccaaggcgtcaccacttagcgccaccgatgctgcagcttttgaaaagcacgctgccgccaacaca |
850 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27053900 |
caaaaacaacttgccaaaaccatccttcatcctctccaaggcgtcaccacttagcgccaccgatgctgcagcttttgaaaagcacgctgccgccaacaca |
27053801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 124 - 271
Target Start/End: Complemental strand, 20762871 - 20762726
Alignment:
| Q |
124 |
taatatataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatatttgtggattgttgtgattaatt-acaccgc |
222 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||| ||| ||||||||| |||||| ||||||||| ||||||| |
|
|
| T |
20762871 |
taatatataaaataatagttcaattt---ttattatacactatatgatagaataaaagattaaatgatatttgtgcattgttctgattaattcacaccgc |
20762775 |
T |
|
| Q |
223 |
gatgaccgcaatctataacgcaacatccgtaacgatcgaaatcgcgaca |
271 |
Q |
| |
|
|| |||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
20762774 |
gacgaccgcaatcagtaacgcaacatccgtaacagccgaaatcgcgaca |
20762726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 655 - 813
Target Start/End: Complemental strand, 27067185 - 27067027
Alignment:
| Q |
655 |
aatgcaggatggttttgcagtaaatcatgcagaagagaaaaggcaaaactcattcactccaaaggcgtatgcaattcggtattgggacagagtgatcaaa |
754 |
Q |
| |
|
|||||||| |||||| || ||||||||| | ||||||| | |||||| ||||||||||||| || |||| |||||| |||||||| |||||||||||| |
|
|
| T |
27067185 |
aatgcaggttggtttagctataaatcatgaaaaagagaagaaccaaaacccattcactccaaaagcttatgtaattcgttattgggatagagtgatcaaa |
27067086 |
T |
|
| Q |
755 |
aacaacttgccaaaaccatcgttcatcctctccaaggcgtcaccacttagcgccaccga |
813 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||| |||||||| ||||||||||| |
|
|
| T |
27067085 |
aacaacttaccaaaaccatctttcatcctctctaaggcctcaccactcagcgccaccga |
27067027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 654 - 850
Target Start/End: Complemental strand, 27080870 - 27080674
Alignment:
| Q |
654 |
caatgcaggatggttttgcagtaaatcatgcagaagagaaaaggcaaaactcattcactccaaaggcgtatgcaattcggtattgggacagagtgatcaa |
753 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||| ||| |||| |||||| |||||||| | || || | ||||||||| |||||||||||||||||||| |
|
|
| T |
27080870 |
caatgcaggttggtttagcagtggatcatgcaggagacaaaaaccaaaacccattcactgcgaaagcttttgcaattcgttattgggacagagtgatcaa |
27080771 |
T |
|
| Q |
754 |
aaacaacttgccaaaaccatcgttcatcctctccaaggcgtcaccacttagcgccaccgatgctgcagcttttgaaaagcacgctgccgccaacaca |
850 |
Q |
| |
|
|||||| || ||||||||| | ||||||||| ||||| |||||||| ||||||||||| | || ||||||| || ||||| || ||||||||| |
|
|
| T |
27080770 |
aaacaagttaccaaaaccaacattcatcctcaataaggcatcaccactcagcgccaccgagaccgcggcttttgcgaaacacgcggcagccaacaca |
27080674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 20763007 - 20762905
Alignment:
| Q |
25 |
caacaccgttcataagaaaaaatagacaataggagatcgtgatgagtcaatagtatctcatgttcctttcatcgtctattttcgtgttgtatagtgttgt |
124 |
Q |
| |
|
|||||||||||||||| ||||||||| ||| |||| |||||||| |||||||||||| ||| |||||||| |||||||| |||||||| ||||||| |
|
|
| T |
20763007 |
caacaccgttcataaggaaaaatagataatgagagactgtgatgagctgatagtatctcatattcatttcatcgcctattttcatgttgtatggtgttgt |
20762908 |
T |
|
| Q |
125 |
aat |
127 |
Q |
| |
|
||| |
|
|
| T |
20762907 |
aat |
20762905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 3424379 - 3424305
Alignment:
| Q |
141 |
gttcaatttaagttattatacattatatgatagaataaatga-tttaataatatttgtggattgttgtgattaatt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| | ||| |||||| ||||| |||||||||||||||| |
|
|
| T |
3424379 |
gttcaatttaagttattatacattatatgatagtataaataatttttataata-ttgtgcattgttgtgattaatt |
3424305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 9e-57; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 125 - 288
Target Start/End: Original strand, 37247583 - 37247747
Alignment:
| Q |
125 |
aatatataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatatttgtggattgttgtgattaatt-acaccgcg |
223 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
37247583 |
aatatataaaataatagttcaaattaagttattatacactatatgatagaataaatgatttaataatatttgtgcattgttgtgattaattcacaccgcg |
37247682 |
T |
|
| Q |
224 |
atgaccgcaatctataacgcaacatccgtaacgatcgaaatcgcgacaaccttaacatgaccgcg |
288 |
Q |
| |
|
| ||| |||||| |||||||||||||||||| |||||||||| ||||||||||| |||||||| |
|
|
| T |
37247683 |
acaaccacaatctgtaacgcaacatccgtaacactcgaaatcgcaacaaccttaacgtgaccgcg |
37247747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 6888156 - 6887900
Alignment:
| Q |
10 |
cggaagcgaaaaacacaacaccgttcataagaaaaaatagacaataggagatcgtgatgagtcaatagtatctcatgttcctttcatcgtctattttcgt |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||| || ||| |||| |||||||| ||||| |||||||| || || |||||| |||||||||| |
|
|
| T |
6888156 |
cggaagtgaaaaacacaacaccgttcataaggaaaaatggataatgagagactgtgatgagccaataatatctcatattgctctcatcgcctattttcgt |
6888057 |
T |
|
| Q |
110 |
gttgtatagtgttgtaatatataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatatttgtggattgttgtga |
209 |
Q |
| |
|
||||||||||||||||| | | |||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
6888056 |
attgtatagtgttgtaatgt------------tgtaatttaagttattatacactat--gatagaataaatgatttaagaatatttgtgcattgttgtga |
6887971 |
T |
|
| Q |
210 |
ttaatt-acaccgcgatgaccgcaatctataacgcaacatccgtaacgatcgaaatcgcgacaaccttaac |
279 |
Q |
| |
|
| |||| ||||||||| || ||||||| ||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6887970 |
tcaattcacaccgcgaagatcgcaatcagtaaagcaacatccgtaacagccgaaatcgcgacaaccttaac |
6887900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 27582459 - 27582387
Alignment:
| Q |
124 |
taatatataaaataatagttcaatttaagttattatacattatatgatagaataaatgattt-aataatatttg |
196 |
Q |
| |
|
|||||||| |||||| |||| |||||| | |||||||| |||||||||||||||||| |||| ||||||||||| |
|
|
| T |
27582459 |
taatatatgaaataaaagtttaattta-gatattataccttatatgatagaataaataatttgaataatatttg |
27582387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 43299361 - 43299426
Alignment:
| Q |
223 |
gatgaccgcaatctataacgcaacatccgtaacgatcgaaatcgcgacaaccttaacatgaccgcg |
288 |
Q |
| |
|
|||||||||||| | ||| |||||||| |||||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
43299361 |
gatgaccgcaatatgtaatgcaacatctgtaacgatcgaaatcgagacaatcttaacgcgaccgcg |
43299426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 14434207 - 14434158
Alignment:
| Q |
259 |
cgaaatcgcgacaaccttaacatgaccgcggccgttatttaaaaccttga |
308 |
Q |
| |
|
||||||||||||||| ||||| ||||||| |||||||||| |||||||| |
|
|
| T |
14434207 |
cgaaatcgcgacaactttaacgcgaccgcgaccgttatttacaaccttga |
14434158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 3e-50; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 124 - 288
Target Start/End: Complemental strand, 21315668 - 21315503
Alignment:
| Q |
124 |
taatatataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatatttgtggattgttgtgattaatt-acaccgc |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
21315668 |
taatatataaaataatagttcaatttaagttattatacactatatgatagaataaatgattaaataatatttgtgcattgttgtgattaattcacaccgc |
21315569 |
T |
|
| Q |
223 |
gatgaccgcaatctataacgcaacatccgtaacgatcgaaatcgcgacaaccttaacatgaccgcg |
288 |
Q |
| |
|
|| ||||| ||||| ||| |||||||||||||| |||||||||| ||||||||| ||||||| |
|
|
| T |
21315568 |
gacgaccgtaatctgtaatgcaacatccgtaacagctgaaatcgcgaaaaccttaacgcgaccgcg |
21315503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 124 - 280
Target Start/End: Complemental strand, 46824739 - 46824582
Alignment:
| Q |
124 |
taatatataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatatttgtggattgttgtgattaa-ttacaccgc |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
46824739 |
taatatataaaataatagttcaatttaagttcttatacactatatgatagaataaatgattaaataatatttgtgcattgttgtgattaatttacaccgc |
46824640 |
T |
|
| Q |
223 |
gatgaccgcaatctataacgcaacatccgtaacgatc-gaaatcgcgacaaccttaaca |
280 |
Q |
| |
|
|| || |||||||| ||| |||||||| ||||| ||| |||||||||| ||| |||||| |
|
|
| T |
46824639 |
gacgatcgcaatctgtaatgcaacatctgtaac-atctgaaatcgcgaaaacattaaca |
46824582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 16962240 - 16962331
Alignment:
| Q |
124 |
taatatataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatatttgtggattgttgtgattaatt |
215 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
16962240 |
taatatataaaatgatagttcaatttaagtttttatacattatatgatagaataaatgatttaataatatttgtgcattgtcgtgattaatt |
16962331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 46824895 - 46824771
Alignment:
| Q |
8 |
tacggaagcgaaaaacacaacaccgttcataagaaaaaatagacaataggagatcgtgatga---gtcaatagtatctcatgttcctttcatcgtctatt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||| || | ||||||| | |||||||||||||| || ||||||||| |||| |
|
|
| T |
46824895 |
tacggaagcgaaaaacacaacaccgttcataagaaaaaatatataatgagaaactgtgatgagccgccaatagtatctcatatttctttcatcgcttatt |
46824796 |
T |
|
| Q |
105 |
ttcgtgttgtatagtgttgtaatat |
129 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
46824795 |
ttcatgttgtatagtgttgtaatat |
46824771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 4848643 - 4848694
Alignment:
| Q |
148 |
ttaagttattatacattatatgatagaataaatga-tttaataatatttgtg |
198 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| | |||||||||||||||| |
|
|
| T |
4848643 |
ttaagttattatacattatatgatagtataaataattttaataatatttgtg |
4848694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 21315788 - 21315702
Alignment:
| Q |
41 |
aaaaaatagacaataggagatcgtgatgagtcaatagtatctcatgttcctttcatcgtctattttcgtgttgtatagtgttgtaat |
127 |
Q |
| |
|
|||||||||| ||| |||| |||||||| |||||||||||||| || ||||||||| ||| |||| ||||| ||||| ||||||| |
|
|
| T |
21315788 |
aaaaaatagataatgagagacagtgatgagccaatagtatctcatattgctttcatcgcctactttcatgttgcatagttttgtaat |
21315702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 5199062 - 5198998
Alignment:
| Q |
148 |
ttaagttattatacattatatgatagaataaatga-tttaataatatttgtggattgttgtgatt |
211 |
Q |
| |
|
||||||||||||||||||||||||| |||||| | |||||||||||||||| | |||| ||||| |
|
|
| T |
5199062 |
ttaagttattatacattatatgataatataaataattttaataatatttgtgcaatgttatgatt |
5198998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 130 - 279
Target Start/End: Original strand, 11445459 - 11445609
Alignment:
| Q |
130 |
ataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatatttgtggattgttgtgattaatt-acaccgcgatgac |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| |
|
|
| T |
11445459 |
ataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatattcgtggattgttgtgattaattcacaccgcaatgaa |
11445558 |
T |
|
| Q |
229 |
cgcaatctataacgcaacatccgtaacgatcgaaatcgcgacaaccttaac |
279 |
Q |
| |
|
|||||||| | || |||||||| |||| |||||||| |||||||||||| |
|
|
| T |
11445559 |
cgcaatctgtgacacaacatccataacagccgaaatcgtgacaaccttaac |
11445609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 145 - 279
Target Start/End: Complemental strand, 42237642 - 42237506
Alignment:
| Q |
145 |
aatttaagttattatacattatatgatagaataaatga-tttaataatatttgtggattgttgtgattaatt-acaccgcgatgaccgcaatctataacg |
242 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||||| | |||||||| ||||||| | ||||||| |||||| ||||||||| ||||| || | || || |
|
|
| T |
42237642 |
aatttaagttattatacattgtttgataatataaataattttaataagatttgtgcaatgttgtggttaattcacaccgcgaagaccgttatttgtatcg |
42237543 |
T |
|
| Q |
243 |
caacatccgtaacgatcgaaatcgcgacaaccttaac |
279 |
Q |
| |
|
|||||||||| || | ||||||| ||| ||||||||| |
|
|
| T |
42237542 |
caacatccgttacaaccgaaatcacgaaaaccttaac |
42237506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 2e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 125 - 304
Target Start/End: Original strand, 6218196 - 6218379
Alignment:
| Q |
125 |
aatatataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatatttgtggattgttgtgattaatt-acaccgcg |
223 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| |
|
|
| T |
6218196 |
aatatataaaataatagtacaatttaagttattatacactatatgatagaataaatgatttaataatatttgtgcattgttgtgattaattcactttgcg |
6218295 |
T |
|
| Q |
224 |
atgaccgcaatctataacgcaacatccg---taacgatcgaaatcgcgacaaccttaacatgaccgcggccgttatttaaaacc |
304 |
Q |
| |
|
| |||| |||||| |||||||||||||| |||| |||||| |||||||||||||| ||||||| || |||||||||||| |
|
|
| T |
6218296 |
acgaccacaatctgtaacgcaacatccgccgtaacagccgaaattgcgacaaccttaacgcgaccgcgaccattatttaaaacc |
6218379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 6218006 - 6218109
Alignment:
| Q |
12 |
gaagcgaaaaacacaacaccgttcataagaaaaaatagacaataggagatcgtgatgagtcaatagtatctcatgttcctttcatcgtctattttcgtgt |
111 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||| | ||| |||| | ||||| || ||||||||||| ||||||||| || |||||||||||| |
|
|
| T |
6218006 |
gaagcgaaaaacacaacaacgttcataaggaaaaatacataatgagagactctaatgagccagtagtatctcatattcctttca-cgcctattttcgtgt |
6218104 |
T |
|
| Q |
112 |
tgtat |
116 |
Q |
| |
|
||||| |
|
|
| T |
6218105 |
tgtat |
6218109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 124 - 279
Target Start/End: Original strand, 75529 - 75682
Alignment:
| Q |
124 |
taatatataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatatttgtggattgttgtgattaatt-acaccgc |
222 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||| ||| ||||||||| |||||| ||||||||| ||||||| |
|
|
| T |
75529 |
taatatataaaataatagttcaattt---ttattatacactatatgatagaataaaagattaaatgatatttgtgcattgttctgattaattcacaccgc |
75625 |
T |
|
| Q |
223 |
gatgaccgcaatctataacgcaacatccgtaacgatcgaaatcgcgacaaccttaac |
279 |
Q |
| |
|
|| |||||||||| ||||||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
75626 |
gacgaccgcaatcagtaacgcaacatacgtaatagccgaaatcgcgacagccttaac |
75682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 75383 - 75495
Alignment:
| Q |
15 |
gcgaaaaacacaacaccgttcataagaaaaaatagacaataggagatcgtgatgagtcaatagtatctcatgttcctttcatcgtctattttcgtgttgt |
114 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||| |||| |||||||| |||||||||||| ||| |||||||| |||||||| |||||| |
|
|
| T |
75383 |
gcgaaaaacacaacaccgttcataaggaaaaatagataatgagagactgtgatgagctgatagtatctcatattcatttcatcgcctattttcatgttgt |
75482 |
T |
|
| Q |
115 |
atagtgttgtaat |
127 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
75483 |
atagcgttgtaat |
75495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 1e-28; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 29112532 - 29112613
Alignment:
| Q |
125 |
aatatataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatatttgtggattgttg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| || ||||||| |
|
|
| T |
29112532 |
aatatataaaataatagttcaatttaagttattatacattatatgatggaataaatgatttaatgatatttatgcattgttg |
29112613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 124 - 254
Target Start/End: Original strand, 24908991 - 24909112
Alignment:
| Q |
124 |
taatatataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatatttgtggattgttgtgattaatt-acaccgc |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
24908991 |
taatatataaaataatagttcaatttaagttattata----------tagaataaatgatttaataatatttgtgcattgttgtgattaattcacaccgc |
24909080 |
T |
|
| Q |
223 |
gatgaccgcaatctataacgcaacatccgtaa |
254 |
Q |
| |
|
| ||| |||||| |||||||| | |||||| |
|
|
| T |
24909081 |
aacgacttcaatctgtaacgcaatacccgtaa |
24909112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 177 - 307
Target Start/End: Original strand, 43579048 - 43579179
Alignment:
| Q |
177 |
aaatgatttaataatatttgtggattgttgtgattaatt-acaccgcgatgaccgcaatctataacgcaacatccgtaacgatcgaaatcgcgacaacct |
275 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||| |||||| || ||||| ||| | ||||| | ||||||||| |||||| | |||||||| |
|
|
| T |
43579048 |
aaatgattaaataatatttgtgtattgttgtgattaattcacaccgtgacgaccgtaatatgtaacgttagatccgtaacagccgaaattgtgacaacct |
43579147 |
T |
|
| Q |
276 |
taacatgaccgcggccgttatttaaaaccttg |
307 |
Q |
| |
|
|| | ||||||| |||||||||||||||||| |
|
|
| T |
43579148 |
tagcccgaccgcgaccgttatttaaaaccttg |
43579179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 174 - 279
Target Start/End: Original strand, 24909123 - 24909229
Alignment:
| Q |
174 |
aataaatgatttaataatatttgtggattgttgtgattaatt-acaccgcgatgaccgcaatctataacgcaacatccgtaacgatcgaaatcgcgacaa |
272 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||| | ||| |||||| |||||||| | |||||| | |||||||||||| |
|
|
| T |
24909123 |
aataaatgatttaataatatttgtgcattgttgtgattaattcacaccgcaacgacttcaatctgtaacgcaatacccgtaataactaaaatcgcgacaa |
24909222 |
T |
|
| Q |
273 |
ccttaac |
279 |
Q |
| |
|
||||||| |
|
|
| T |
24909223 |
ccttaac |
24909229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 43578832 - 43578916
Alignment:
| Q |
11 |
ggaagcgaaaaacacaacaccgttcataagaaaaaatagacaataggagatcgtgatgagtcaatagtatctcatgttcctttca |
95 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||| ||| |||| |||||||| |||||||||||||| || |||||| |
|
|
| T |
43578832 |
ggaagcgaaaaacacaacacaattcataaggaaaaatagataatgcgagagtgtgatgagccaatagtatctcatattactttca |
43578916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 24908849 - 24908955
Alignment:
| Q |
8 |
tacggaagcgaaaaacacaacaccgttcataagaaaaaatagacaataggagatcgtgatgagtcaatagtatctcatgttcctttcatcgtctattttc |
107 |
Q |
| |
|
||||||| |||||||||||||| | |||||||| |||| |||| ||| ||||| ||||||| || ||||||||||| |||||||||||| ||||| | |
|
|
| T |
24908849 |
tacggaaacgaaaaacacaacaacattcataaggaaaa-tagataatgagagattgtgatgaaccagtagtatctcatattcctttcatcgcctattgta |
24908947 |
T |
|
| Q |
108 |
gtgttgta |
115 |
Q |
| |
|
|||||||| |
|
|
| T |
24908948 |
gtgttgta |
24908955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 29112441 - 29112505
Alignment:
| Q |
63 |
gtgatgagtcaatagtatctcatgttcctttcatcgtctattttcgtgttgtatagtgttgtaat |
127 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||| ||||||||||||||| | || ||||||||| |
|
|
| T |
29112441 |
gtgatgagccaataatatctcatattcctttcattgtctattttcgtgttatgtaatgttgtaat |
29112505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 32617594 - 32617528
Alignment:
| Q |
202 |
tgttgtgattaatt-acaccgcgatgaccgcaatctataacgcaacatccgtaacgatcgaaatcgc |
267 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||| ||| ||||||| |||||||| |||||||||| |
|
|
| T |
32617594 |
tgttgtgattaatttacaccgcgacaaccgcaatccatatcgcaacacccgtaacggtcgaaatcgc |
32617528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 29112616 - 29112669
Alignment:
| Q |
226 |
gaccgcaatctataacgcaacatccgtaacgatcgaaatcgcgacaaccttaac |
279 |
Q |
| |
|
||||||||||| |||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
29112616 |
gaccgcaatctctaacgcaacatccgtaacagccaaaatcgcgacaaccttaac |
29112669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 160
Target Start/End: Original strand, 43579012 - 43579046
Alignment:
| Q |
126 |
atatataaaataatagttcaatttaagttattata |
160 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43579012 |
atatatataataatagttcaatttaagttattata |
43579046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 2e-27; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 1229461 - 1229342
Alignment:
| Q |
8 |
tacggaagcgaaaaacacaacaccgttcataagaaaaaatagacaataggagatcgtgatgagtcaatagtatctcatgttcctttcatcgtctattttc |
107 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| ||||||||| || ||||| ||||||||||||||||||||||| | ||||||||| ||||||| |
|
|
| T |
1229461 |
tacggaagcgaaaagcacaacaccgttcctaaggaaaaatagataacgagagattgtgatgagtcaatagtatctcataatactttcatcgcctatttta |
1229362 |
T |
|
| Q |
108 |
gtgttgtatagtgttgtaat |
127 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1229361 |
atgttgtatagtgttgtaat |
1229342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 145 - 283
Target Start/End: Original strand, 2718757 - 2718898
Alignment:
| Q |
145 |
aatttaagttattatacattatatgatagaataaatga-tttaataatatttgtggattgttgtgattaatt-acacc-gcgatgaccgcaatctataac |
241 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||| | |||||||||||||||| | ||||||||||||| ||||| |||||||| ||||| |||| |
|
|
| T |
2718757 |
aattgaagttattatacattatatgataatataaataattttaataatatttgtgaaaggttgtgattaattcacaccaacgatgaccataatctctaac |
2718856 |
T |
|
| Q |
242 |
gcaacatccgtaacgatcgaaatcgcgacaaccttaacatga |
283 |
Q |
| |
|
||||||| | ||| | |||||||||||||||||||||||| |
|
|
| T |
2718857 |
gcaacattcataatagttgaaatcgcgacaaccttaacatga |
2718898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 1229308 - 1229260
Alignment:
| Q |
128 |
atataaaataatagttcaatttaagttattatacattatatgatagaat |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1229308 |
atataaaataatagttcaatttaagttattatatattatatgatagaat |
1229260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 6134289 - 6134223
Alignment:
| Q |
150 |
aagttattatacattatatgatagaataaatga-tttaataatatttgtggattgttgtgattaatt |
215 |
Q |
| |
|
||||||||||||||||| |||||| |||||||| |||||||| ||||||| | |||||||||||||| |
|
|
| T |
6134289 |
aagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgattaatt |
6134223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 2721825 - 2721899
Alignment:
| Q |
140 |
agttcaatttaagttattatacattatatgatagaataaatga-tttaataatatttgtggattgttgtgattaa |
213 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| |||||| | ||||||||||||| || | ||||||||||| |
|
|
| T |
2721825 |
agtttaattgaagttattatacattatatgatagtataaataattttaataatatttatgcaaggttgtgattaa |
2721899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 9771917 - 9771990
Alignment:
| Q |
183 |
tttaataatatttgtggattgttgtgattaatt-acaccgcgatgaccgcaatctataacgcaacatccgtaac |
255 |
Q |
| |
|
|||||||| ||||||| | |||||||||||||| ||| ||||| |||| ||||| |||| ||||||||| |||| |
|
|
| T |
9771917 |
tttaataacatttgtgcaatgttgtgattaattcacaacgcgacgaccacaatccataaggcaacatccttaac |
9771990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 201 - 307
Target Start/End: Complemental strand, 29350060 - 29349954
Alignment:
| Q |
201 |
ttgttgtgattaattacaccgcgatgaccgcaatctataacgcaacatccgtaacgatcgaaatcgcgacaaccttaacatgaccgcggccgttatttaa |
300 |
Q |
| |
|
|||||||||| | | || || ||| ||||||||| ||||||||||||| ||||| ||||||||| |||||||||||| ||||||| ||||||||||| |
|
|
| T |
29350060 |
ttgttgtgataattcacgccacgacgaccgcaatttataacgcaacattcgtaatagccgaaatcgcaacaaccttaacacgaccgcgaccgttatttaa |
29349961 |
T |
|
| Q |
301 |
aaccttg |
307 |
Q |
| |
|
||||||| |
|
|
| T |
29349960 |
aaccttg |
29349954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0526 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0526
Description:
Target: scaffold0526; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 279
Target Start/End: Original strand, 3335 - 3465
Alignment:
| Q |
151 |
agttattatacattatatgatagaataaatgatttaataata-tttgtggattgttgtgattaatt-acaccgcgatgaccgcaatctataacgcaacat |
248 |
Q |
| |
|
||||||||| |||||| |||||| |||||| ||||||| ||| |||||| | |||||||||||||| |||| ||||| ||| |||||||| |||| || |
|
|
| T |
3335 |
agttattatgcattatctgatagtataaataatttaattataatttgtgcaatgttgtgattaattcacacagcgataaccataatctatatcgcagcac |
3434 |
T |
|
| Q |
249 |
ccgtaacgatcgaaatcgcgacaaccttaac |
279 |
Q |
| |
|
| | || |||||||||| ||||||||||| |
|
|
| T |
3435 |
tcattactgtcgaaatcgcaacaaccttaac |
3465 |
T |
|
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Target: scaffold0191 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 30707 - 30742
Alignment:
| Q |
11 |
ggaagcgaaaaacacaacaccgttcataagaaaaaa |
46 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30707 |
ggaagcgaagaacacaacaccgttcataagaaaaaa |
30742 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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