View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4369-Insertion-5 (Length: 547)
Name: NF4369-Insertion-5
Description: NF4369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4369-Insertion-5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 148 - 443
Target Start/End: Complemental strand, 38407928 - 38407632
Alignment:
| Q |
148 |
atttgttgggttaactaattaatggtatctcttcattttcccttaaagaaaggaattaccttctagtttaaaatttatataatatatcaacnnnnnnnac |
247 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
38407928 |
atttgatgggttaactaattaatggtatctcttcattttcccttaaagaaaggaattactttctagtttaaaatttatataatatatcaactttttttac |
38407829 |
T |
|
| Q |
248 |
tgtttattggtcagattcctggcatggcataacttgtaatcaaagctttttagcgtttgtaatttaaattatgttcattcaaa-ccactttagtattttc |
346 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
38407828 |
tgtttatgggtcagattcctggcatggcataacctgtaatcaaagctttttagcttttgtaatttcaattatgttcattcaaaaccactttagtattttc |
38407729 |
T |
|
| Q |
347 |
agttcctatgtttggatatattaatcgtatatattgaagggtcccaagtgagttcattgtaaacatttttgtttgaaaagattaatgcttcaagatt |
443 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38407728 |
agttcctatgtttggatatattaatcatatatatttaagggtcccaagtgagttcattgtaaacatttttgtttgaaaagattaatgcttcaagatt |
38407632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 38408040 - 38407933
Alignment:
| Q |
8 |
tatgaaagtaaaacaaattca-tgttgaccttttcctctcattaaacttgtgttc-tccccataatcctttgtatgattgtactttaacagtacagaagc |
105 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38408040 |
tatgaaagtaaaacaaattcaatgttgaccttttcctctcattaaacttgtgttcatccccataatcctttgtatgattgtactttaacagtacagaagc |
38407941 |
T |
|
| Q |
106 |
aatcagtt |
113 |
Q |
| |
|
|||||||| |
|
|
| T |
38407940 |
aatcagtt |
38407933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 480 - 547
Target Start/End: Complemental strand, 38407596 - 38407529
Alignment:
| Q |
480 |
aatggcaatatccacacaaagattaatgccaatttgtgaatcacatttggttagcttgcttgagtgtc |
547 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
38407596 |
aatggcaatatccacagaaagattaatgctaatttgtgaatcacattgggtttgcttgcttgagtgtc |
38407529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 38412387 - 38412343
Alignment:
| Q |
398 |
gttcattgtaaacatttttgtttgaaaagattaatgcttcaagatt |
443 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38412387 |
gttcattgcaaacatttttgtttg-aaagattaatgcttcaagatt |
38412343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 8 - 287
Target Start/End: Original strand, 1091517 - 1091793
Alignment:
| Q |
8 |
tatgaaagtaaaacaaattcat-gttgaccttttcctctcattaaacttgtgttc-tccccataatcctttgtatgattgtactttaacagtacagaagc |
105 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
1091517 |
tatgaaagttaaacaaattcattgttgaccttttcctctcattaaacctgtgttcatccccataatcctttgtatgactgtattttaacagtacagaagc |
1091616 |
T |
|
| Q |
106 |
aatcagttgtgaggaattcaacaaatattgtggaacagaagcatttgttgggttaactaattaatggtatctcttcattttcccttaaagaaaggaatta |
205 |
Q |
| |
|
|||||||| ||| || ||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| ||||| |||||| ||||||||| |
|
|
| T |
1091617 |
aatcagttatgatgagttcaacaaataatgtggaacagaagcatttgttgagttaactaata----gtatctcttctgtttcctttaaaggaaggaatta |
1091712 |
T |
|
| Q |
206 |
ccttctagtttaaaatttatataatatatcaacnnnnnnnactgtttattggtcagattcctggcatggcataacttgtaat |
287 |
Q |
| |
|
| || ||||||||||||||| ||||| |||| | |||||||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
1091713 |
ctttatagtttaaaatttatgtaatacatcagc-ttttttactgtttagtggtctgattcctggcatggaataacttgtaat |
1091793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University