View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4369-Insertion-6 (Length: 338)
Name: NF4369-Insertion-6
Description: NF4369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4369-Insertion-6 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 338
Target Start/End: Complemental strand, 671056 - 670729
Alignment:
| Q |
8 |
atgatcacaaggatagaaatattgatcccatcaactctctccttttgagtcatggttaaatctcgatcttgtccaaatcgaacatggggggagactatga |
107 |
Q |
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| T |
671056 |
atgatcacgaggatagaaatattgatcccatcaactctctccttttgagtcatggttaaatctt----ttgtccaaatcgaacatggggggagactatga |
670961 |
T |
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| Q |
108 |
tcgtcatgtttagttgcattaaaatacgaataagcttt-catccacggagtgagtgagtgtgggaaatcgctttgatacaagaaaatctgcacctctgat |
206 |
Q |
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| T |
670960 |
tcatcatgtttagttgcattagaatacgaataagctttgcatccacggagtgagtgagtgtgggaaatcgctttgatgcaagaaaatctgcacctctgat |
670861 |
T |
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| Q |
207 |
tttgtgaagattctagtgtcaagatttttcactattatatttgttaagtggatggacgtgtcattgttggtggttgaacactgagattttctaagacacc |
306 |
Q |
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| T |
670860 |
tttgtgaagattctagtgtcaagatttttcactattatatttgttaagtggatggacgtgtcattgttggtggttgaacactgagattttctaagacacc |
670761 |
T |
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| Q |
307 |
caaattgttctccatcatcaatacccaaccta |
338 |
Q |
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| T |
670760 |
caaattgttctccatcatcaatactcaaccta |
670729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 672982 - 672902
Alignment:
| Q |
113 |
atgtttagttgcattaaaatacgaataagcttt-catccacggagtgagtgagtgtgggaaatcgctttgatacaagaaaa |
192 |
Q |
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| T |
672982 |
atgtttagttgaattagaatacgaataagctttgcatccacggagggagtgagtgtgggaactcactttgatgcaagaaaa |
672902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 673111 - 673001
Alignment:
| Q |
9 |
tgatcacaaggatagaaatattgatcccatcaactctctccttttgagtcatggttaaatctcgatcttgtccaaatcgaacatggggggagactatgat |
108 |
Q |
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| T |
673111 |
tgatcataaagatagatatattgatcccatcaactctctccttgtgaatcatggttaaatc----ccttgtccaaatcgaatatgggtggaaactataat |
673016 |
T |
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| Q |
109 |
cgtcatgtttagttg |
123 |
Q |
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| T |
673015 |
cactatgtttagttg |
673001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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