View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4369-Insertion-7 (Length: 329)

Name: NF4369-Insertion-7
Description: NF4369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4369-Insertion-7
NF4369-Insertion-7
[»] chr7 (3 HSPs)
chr7 (8-329)||(46895845-46896166)
chr7 (297-329)||(18819465-18819497)
chr7 (291-327)||(32002081-32002117)
[»] chr1 (4 HSPs)
chr1 (291-329)||(9922203-9922241)
chr1 (291-326)||(40905823-40905858)
chr1 (295-329)||(15873799-15873833)
chr1 (293-329)||(41081251-41081287)
[»] chr5 (1 HSPs)
chr5 (294-329)||(37993619-37993654)
[»] chr8 (1 HSPs)
chr8 (291-325)||(26413398-26413432)
[»] chr6 (1 HSPs)
chr6 (291-329)||(35107986-35108024)
[»] chr4 (5 HSPs)
chr4 (291-329)||(23149866-23149904)
chr4 (291-329)||(29728744-29728782)
chr4 (291-329)||(50744798-50744836)
chr4 (291-320)||(28485803-28485832)
chr4 (293-321)||(7984159-7984187)
[»] chr3 (3 HSPs)
chr3 (291-329)||(20494019-20494057)
chr3 (291-329)||(53506227-53506265)
chr3 (291-329)||(54258449-54258487)


Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 329
Target Start/End: Original strand, 46895845 - 46896166
Alignment:
Q  8 gttttttcaacattttaaggtgatctctatgcatatttggtataagctgtcacctattgacaatctccgtgcaagctttcatggaaacaaatatgaaagt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46895845 gttttttcaacattttaaggtgatctctatgcatatttggtataagctgtcacctattgacaatctccgtgcaagctttcatggaaacaaatatgaaagt 46895944  T
Q  108 gttaatgttcatttatagtagtaacaacagcaatattttgaacttatatttttaattctatgatggtaaataaacttttgctactattaatcttacacgc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  46895945 gttaatgttcatttatagtagtaacaacagcaatattttgaacttatatttttaattctatgatggtaaataaacttttgctactattaatcttacaagc 46896044  T
Q  208 ttttattttgttatatgaaatctgagtacattaacaaagtagtttgtttttattaggtaaatgtatgggtgnnnnnnnnnnnnaatgacaaatgttagta 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||    
T  46896045 ttttattttgttatatgaaatctgagtacattaacaaagtagtttgtttttattaggtaaatgtatgggtgttttttgtttttaatgacaaatgttagta 46896144  T
Q  308 tgttaattgttattttagtttt 329  Q
    ||||||||||||||||||||||    
T  46896145 tgttaattgttattttagtttt 46896166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 18819465 - 18819497
Alignment:
Q  297 aaatgttagtatgttaattgttattttagtttt 329  Q
    |||||||||||||||||||||||| ||||||||    
T  18819465 aaatgttagtatgttaattgttatattagtttt 18819497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 32002081 - 32002117
Alignment:
Q  291 aatgacaaatgttagtatgttaattgttattttagtt 327  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  32002081 aatggcaaatgttagtatgttaattgttatgttagtt 32002117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 329
Target Start/End: Complemental strand, 9922241 - 9922203
Alignment:
Q  291 aatgacaaatgttagtatgttaattgttattttagtttt 329  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  9922241 aatgacaaatgttagtatgttaattgttatgttagtttt 9922203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 291 - 326
Target Start/End: Complemental strand, 40905858 - 40905823
Alignment:
Q  291 aatgacaaatgttagtatgttaattgttattttagt 326  Q
    |||||||||||||||||||||||||||||| |||||    
T  40905858 aatgacaaatgttagtatgttaattgttatgttagt 40905823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 329
Target Start/End: Complemental strand, 15873833 - 15873799
Alignment:
Q  295 acaaatgttagtatgttaattgttattttagtttt 329  Q
    |||||||||||||||||||||||||| ||||||||    
T  15873833 acaaatgttagtatgttaattgttatgttagtttt 15873799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 293 - 329
Target Start/End: Complemental strand, 41081287 - 41081251
Alignment:
Q  293 tgacaaatgttagtatgttaattgttattttagtttt 329  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  41081287 tgacaaatgttagtattttaattgttatgttagtttt 41081251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 294 - 329
Target Start/End: Complemental strand, 37993654 - 37993619
Alignment:
Q  294 gacaaatgttagtatgttaattgttattttagtttt 329  Q
    ||||||||||||||||||||||||||| ||||||||    
T  37993654 gacaaatgttagtatgttaattgttatgttagtttt 37993619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 325
Target Start/End: Original strand, 26413398 - 26413432
Alignment:
Q  291 aatgacaaatgttagtatgttaattgttattttag 325  Q
    |||||||||||||||||||||||||||||| ||||    
T  26413398 aatgacaaatgttagtatgttaattgttatgttag 26413432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 329
Target Start/End: Complemental strand, 35108024 - 35107986
Alignment:
Q  291 aatgacaaatgttagtatgttaattgttattttagtttt 329  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  35108024 aatgacaaatgttagtatgttaattattatattagtttt 35107986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 329
Target Start/End: Original strand, 23149866 - 23149904
Alignment:
Q  291 aatgacaaatgttagtatgttaattgttattttagtttt 329  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  23149866 aatgacaaatgttagtatgttaattgttatgttattttt 23149904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 329
Target Start/End: Original strand, 29728744 - 29728782
Alignment:
Q  291 aatgacaaatgttagtatgttaattgttattttagtttt 329  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  29728744 aatgacaagtgttagtatgttaattgttatgttagtttt 29728782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 329
Target Start/End: Complemental strand, 50744836 - 50744798
Alignment:
Q  291 aatgacaaatgttagtatgttaattgttattttagtttt 329  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  50744836 aatgacaaatgttagcatgttaattgttatgttagtttt 50744798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 320
Target Start/End: Complemental strand, 28485832 - 28485803
Alignment:
Q  291 aatgacaaatgttagtatgttaattgttat 320  Q
    ||||||||||||||||||||||||||||||    
T  28485832 aatgacaaatgttagtatgttaattgttat 28485803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 293 - 321
Target Start/End: Complemental strand, 7984187 - 7984159
Alignment:
Q  293 tgacaaatgttagtatgttaattgttatt 321  Q
    |||||||||||||||||||||||||||||    
T  7984187 tgacaaatgttagtatgttaattgttatt 7984159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 329
Target Start/End: Complemental strand, 20494057 - 20494019
Alignment:
Q  291 aatgacaaatgttagtatgttaattgttattttagtttt 329  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  20494057 aatgacaaatgttagtatgttaattattatgttagtttt 20494019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 329
Target Start/End: Complemental strand, 53506265 - 53506227
Alignment:
Q  291 aatgacaaatgttagtatgttaattgttattttagtttt 329  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  53506265 aatgataaatgttagtatgttaattgttatgttagtttt 53506227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 329
Target Start/End: Complemental strand, 54258487 - 54258449
Alignment:
Q  291 aatgacaaatgttagtatgttaattgttattttagtttt 329  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  54258487 aatggcaaatgttagtatgttaattgttatgttagtttt 54258449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University